Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0915
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0312 - 16259612-16260231,16260264-16262796 31 0.66
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380... 30 1.5
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871... 30 1.5
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 29 2.6
02_04_0150 - 20215070-20217577 29 4.6
09_04_0463 - 17803120-17803233,17803647-17803758,17803866-178039... 28 6.1
11_06_0380 + 22937941-22937984,22939375-22941481 28 8.1
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 28 8.1
>11_04_0312 - 16259612-16260231,16260264-16262796
Length = 1050
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 315 KGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIDRSLGVLKDLQDLIFNIH 494
+GLI+KL Y++ L V ++ + +D + + + + VL L D IF I
Sbjct: 663 EGLISKLRYLEELYVDTSKVTAYLMIEI--DDLLRLRCLQLFIKDVSVLS-LNDQIFRID 719
Query: 495 -KRNMSSYLIYQ*FQWL 542
R + SY+IY QW+
Sbjct: 720 FVRKLKSYIIYTELQWI 736
>12_02_0272 -
16634765-16635004,16635412-16635457,16636107-16638098,
16639478-16640286
Length = 1028
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 309 DFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVT 425
DF G++ K++ + + IF +D PE Y NV+
Sbjct: 316 DFHGMVYKMEPLNEFNSQKLFCKRIFDSDSIPEQYKNVS 354
>08_02_1287 -
25886509-25886766,25886887-25887004,25887098-25887177,
25887258-25887338,25887493-25887576,25888013-25888171,
25888660-25888752,25888928-25888945,25889194-25889280,
25889634-25889760,25889849-25889920,25890319-25890404,
25890519-25890626,25890709-25890850,25891432-25891508,
25891902-25892054,25892411-25892503,25892608-25892790,
25892924-25893334
Length = 809
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 288 SNNDGTGDFKGLITKLDYIQNLGVAAIRL 374
SN + G + G I+KLDY++ LGV + L
Sbjct: 261 SNVEHPGTYIGAISKLDYLKELGVNCVEL 289
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 381 IFQADHYPEDYNNVTSMLDIDRSLGVLKDLQDLIFNIHKRNMSSYL 518
+++ +PE+Y N S+L+I VL DL N H + +SYL
Sbjct: 549 LYELAMHPENYKNSDSLLEISDDFVVLNDLYPKCSNWH-LSSTSYL 593
>02_04_0150 - 20215070-20217577
Length = 835
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 194 PMIAARQAMSPDSTTHSKIFRITTQFQFTKLGSFLLLI 81
PM+ A A+SPD T K F +TT T LG+ L +
Sbjct: 34 PMLVATFAVSPDLRTTEK-FMVTTTVLMTFLGAALFAV 70
>09_04_0463 -
17803120-17803233,17803647-17803758,17803866-17803927,
17804171-17804269,17804370-17804474,17804560-17804639,
17806445-17806517,17806611-17806700,17807215-17807277,
17808104-17808155,17808504-17808604,17809139-17809238,
17809683-17809746,17810127-17810184,17810549-17810635,
17810736-17810870,17810950-17811054,17811247-17811351,
17811427-17811663,17812287-17812380,17812863-17813020,
17813289-17813363,17813448-17813512,17814206-17814260
Length = 762
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 306 GDFKGLITKLDYIQNLGVAAIRLNYIFQAD 395
G + GLI K+ ++ LGV A+ L +F+ D
Sbjct: 255 GSYLGLIDKIPHLLELGVNAVELLPVFEYD 284
>11_06_0380 + 22937941-22937984,22939375-22941481
Length = 716
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 188 IAARQAMSPDSTTHSKIFRITTQFQFTKLGSFLLLIFKFPFSLTSSACPIIRSPFL 21
I A++ +T H K +TT +F LL + + PF + S II PF+
Sbjct: 663 ILCYMALNCGATFHVK--HLTTGGEFLTQAKMLLFVIRLPFLMKSPLEGIIMPPFM 716
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 587 NNTEVNYLDPTTVAIIHW 640
NN E+NY P T AI++W
Sbjct: 255 NNDEINYRQPETRAIMNW 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,707,990
Number of Sequences: 37544
Number of extensions: 321953
Number of successful extensions: 744
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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