Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0915
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 7e-10
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 39 0.004
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.072
SB_55023| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0) 30 2.0
SB_12501| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 28 8.3
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39) 28 8.3
>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/78 (37%), Positives = 46/78 (58%)
Frame = +3
Query: 285 DSNNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIDRSLGVLK 464
DSN DG GD G+ ++LDY+ LGV I L+ IF++ Y +V+ +D++ G ++
Sbjct: 41 DSNGDGNGDLSGIRSRLDYLDYLGVKIIYLSPIFKSPMVDNGY-DVSDFMDVNPMFGTME 99
Query: 465 DLQDLIFNIHKRNMSSYL 518
D + L+ +IH R M L
Sbjct: 100 DFESLLQDIHSRGMKLLL 117
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +3
Query: 279 FKDSNNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIDRSLGV 458
+K S + G+I KL Y++NLGV + + +F + + D++ +LG
Sbjct: 656 YKISAQQFNKNLTGIIDKLGYLENLGVKVLSIGAVFSEE----------DLQDVNNALGK 705
Query: 459 LKDLQDLIFNIHKRNM 506
++D Q+L+ H R M
Sbjct: 706 MEDFQNLLKKAHDRKM 721
>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 37.1 bits (82), Expect = 0.013
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +1
Query: 16 LSKNGDLIIGQAEDVKLNGNLKINNRKLPSFVNWNWVVIRKILLWVVLSGLIACLAAIIG 195
L +NG LI+ + DV++ G + I + V WVV +++L VL +I+ L IIG
Sbjct: 133 LKENGALIVDEVNDVRIIGLITIVFILAVALVGLKWVVRTQVILLAVL--IISILDVIIG 190
Query: 196 MIITIPKECNIDLP---WYQGKVFTKYFLP 276
I P+ + YQ VF F+P
Sbjct: 191 TFIG-PQNASSKAQGFLGYQDGVFQTNFMP 219
>SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 34.7 bits (76), Expect = 0.072
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +1
Query: 94 KLPSFVNWNWVVIRKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFTKYFL 273
KL + W WVV+ + +W+VLS L + + I + + QG V
Sbjct: 217 KLDDVIKWRWVVV-FVPMWIVLSLLCLLVLYYVIWSIIFVRTTEVLPAQRQGHVMVAIAS 275
Query: 274 PVLKIPIMMAQVIL 315
+L IP++ Q+IL
Sbjct: 276 VLLVIPLLTFQIIL 289
>SB_55023| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)
Length = 354
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 619 NCCYNSLVSSTRELMGFLFKKNLGN 693
NC +N++ +MGF FKKN G+
Sbjct: 296 NCLFNTVSDKKIAIMGFAFKKNTGD 320
>SB_12501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = -3
Query: 520 IKYDDMFLLCILNIRSCKSLSTPKLLSMSNIEVTLL*SS 404
++ D FLLC+L+ S S ++P+L + ++ ++ LL SS
Sbjct: 24 VRISDAFLLCLLSSASLFSSNSPELSAAAHSDLHLLRSS 62
>SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3
Query: 285 DSNNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTS---MLDIDRSL 452
D NNDGT DF I L I G +L + F+ Y D + S ML+I RS+
Sbjct: 76 DKNNDGTIDFNEFIQGLSIISR-GSKETKLRWAFEI--YDSDGSGEVSKKEMLEIVRSI 131
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 270 PASFKDSNNDGTGDFKGLITKLDYIQ---NLGVAAIRLNYIFQADHYPEDYNNVTSMLDI 440
P + + + G KGL+ + Y N+G+ + +FQ+D Y D +V LD+
Sbjct: 1479 PGAMESFDVAAAGTNKGLVERATYTALGVNVGLHGVLHTELFQSDRYLPDGVSVKLKLDL 1538
Query: 441 DRSLGVL 461
+ VL
Sbjct: 1539 NPDAFVL 1545
>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 270 PASFKDSNNDGTGDFKGLITKLDYIQ---NLGVAAIRLNYIFQADHYPEDYNNVTSMLDI 440
P + + + G KGL+ + Y N+G+ + +FQ+D Y D +V LD+
Sbjct: 1241 PGAMESFDVAAAGTNKGLVERATYTALGVNVGLHGVLHTELFQSDRYLPDGVSVKLKLDL 1300
Query: 441 DRSLGVL 461
+ VL
Sbjct: 1301 NPDAFVL 1307
>SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)
Length = 1607
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 655 PLCLRPMNYSNSCWIQIVNFSIICYD 578
P CL+P N+ Q+ NFS C++
Sbjct: 1235 PRCLKPSNFGTLTSTQVCNFSDACHN 1260
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,946,332
Number of Sequences: 59808
Number of extensions: 396940
Number of successful extensions: 911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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