Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0913
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0352 - 3870921-3871272,3871383-3871479,3871541-3871621,387...    30   1.5  
12_02_0744 - 22704637-22705341                                         29   2.6  
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573     29   2.6  
04_03_0811 - 19909128-19912214                                         29   2.6  
02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483     29   2.6  
02_02_0582 - 11798252-11798908                                         29   2.6  
02_04_0509 - 23554609-23555241,23555371-23556318                       29   3.5  
12_01_0591 - 4835894-4836328,4836343-4837882,4838911-4839050,484...    28   8.1  
11_01_0475 - 3669734-3671452                                           28   8.1  
06_03_1364 - 29590251-29590832                                         28   8.1  

>10_01_0352 -
           3870921-3871272,3871383-3871479,3871541-3871621,
           3874854-3875028,3875650-3875661
          Length = 238

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 357 GEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRGH 488
           G D + +     +G A G   + GG  G VGDA     L  RG+
Sbjct: 127 GSDPNGVGRRAPEGRAPGCARVEGGSSGTVGDATRAAVLGGRGN 170


>12_02_0744 - 22704637-22705341
          Length = 234

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 360 EDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFG 470
           EDD + +  G    ATG  +  GG GG  GD+ VR G
Sbjct: 47  EDDDDRDADGAAAFATGAADGGGGGGGG-GDSHVRNG 82


>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
          Length = 409

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 396 GSATGDVN--ISGGEGGAVGDAQVRFGLSNRGHLVVHVGD 509
           GS+  D N  I+G    A G   V FGL++ G + +H GD
Sbjct: 291 GSSCNDDNSSIAGDVMVAAGGDSVSFGLTSEGSVTMHAGD 330


>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 497 DDQVTTIR*PKTHLCIADCSTFTSRNIN 414
           DDQV  I+    H+CI D   F S NIN
Sbjct: 673 DDQVANIKKNIAHVCIEDSRLFYSFNIN 700


>02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483
          Length = 475

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 399 SATGDVNISGGEGGAVGDAQVRFGLSNRGHLVVHVGDTSSLNTSAIGRKLDGPAA 563
           + TG     GG+GG  GD   +F  +  G +V  +   S++  SAI R+  G AA
Sbjct: 21  ATTGGGGGDGGDGGGGGDPFEQFPEAVLGLIVSKLPFRSAVAASAISRRWRGVAA 75


>02_02_0582 - 11798252-11798908
          Length = 218

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 387 GFD-GSATGDVNISGGEGGAVGDAQVRFGLSNRGHLVVHVGDTS-SLNTSAIGRKLDGPA 560
           G D G    DV I GG G AV    V  G    G + VH+G    S++T   G    G +
Sbjct: 99  GIDVGHGGVDVGIGGGGGAAVNGGGVHAGGGGGGGVGVHIGHGGVSISTGGGGGAGGGES 158

Query: 561 A 563
           A
Sbjct: 159 A 159


>02_04_0509 - 23554609-23555241,23555371-23556318
          Length = 526

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 369 SNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNR 482
           S+   TG DG A   VN+S     AV DA +R  + +R
Sbjct: 169 SSSSPTGHDGGAAPAVNVSAPIAAAVADATMRAVIGDR 206


>12_01_0591 -
           4835894-4836328,4836343-4837882,4838911-4839050,
           4840051-4840605
          Length = 889

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 471 LSNRGHLVVHVGDTSSLNTSAIGRKLD 551
           L+N  HL VH+GD   L  + + R+LD
Sbjct: 650 LTNMRHLGVHLGDIGLLADADVARRLD 676


>11_01_0475 - 3669734-3671452
          Length = 572

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 203 SSGSTHFRFAGPLCEEEELFDAID 132
           SSG+ HFR +G +   +E+F A++
Sbjct: 486 SSGAKHFRVSGSVASPDEIFAALE 509


>06_03_1364 - 29590251-29590832
          Length = 193

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +3

Query: 426 GGEGGAVGDAQVRFGLSNRGHLVVHVGDTSSLNTSAIGRKLDGPAAK----RIQLGCRAS 593
           GG GGA G   VR  L N    V H+ D +      +GR    P  K     +Q  C A+
Sbjct: 87  GGRGGAGGAGPVRDCLENMADSVGHLRDAAQELGGNMGR-AGSPGFKWHLSNVQTWCSAA 145

Query: 594 IT 599
           +T
Sbjct: 146 LT 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,997,473
Number of Sequences: 37544
Number of extensions: 372935
Number of successful extensions: 1291
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)