Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0913
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 30 1.5
SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5) 30 1.5
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 30 1.5
SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5) 30 1.5
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17) 30 1.5
SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8) 30 1.5
SB_32624| Best HMM Match : rve (HMM E-Value=0.00042) 30 1.5
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) 30 1.5
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) 30 1.5
SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_58368| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_1704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_33645| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08) 29 4.7
SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17) 28 6.2
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 6.2
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 28 6.2
SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5) 28 8.3
SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_42895| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_39898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 28 8.3
>SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 31.1 bits (67), Expect = 0.89
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -2
Query: 440 STFTSRNINISSCRAIKT---SHFHIRIVLSVISFVIVRAIFIVIPHTLINKL 291
S T +++ R I T HF R VL V+ FV V +I IV+P+ L+ +L
Sbjct: 108 SVMTLLGMSMERYRLIVTPFRQHFGPRTVLGVVVFVWVLSIAIVLPYMLVLRL 160
>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2190
Score = 30.7 bits (66), Expect = 1.2
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Frame = -2
Query: 290 WFHFGSDSIVLISSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDA---IDGLFG 120
W F S+ G+ T S P G F GP EE F IDG +G
Sbjct: 318 WTEFSPCSVTC-GRGLSTRSRACSEPAPQYGGRNCSEFLGPNTEEVPCFPKLCPIDGFYG 376
Query: 119 LLTA-----TGVEEGLESRSVS---NLVITDCLCCDDLGPGLEVGSC 3
+A G +SR+ S + + L C LGP LE+ C
Sbjct: 377 NWSAFTRCSLSCGGGTQSRNRSCDSPSPVGEGLNCTRLGPALEIRVC 423
>SB_56113| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 1163
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P+GS E +T+PD++ T+
Sbjct: 745 ARHKAADAISRHPTGSTTPEMMTLPDDIATI 775
>SB_35972| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 325
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P+GS E +T+PD++ T+
Sbjct: 234 ARHKAADAISRHPTGSTTPEMMTLPDDIATI 264
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P+GS E +T+PD++ T+
Sbjct: 679 ARHKAADAISRHPTGSTTPEMMTLPDDIATI 709
>SB_12746| Best HMM Match : DUF1379 (HMM E-Value=5.5)
Length = 398
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P+GS E +T+PD++ T+
Sbjct: 172 ARHKAADAISRHPTGSTTPEMMTLPDDIATI 202
>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1013
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P+GS E +T+PD++ T+
Sbjct: 93 ARHKAADAISRHPTGSTTPEMMTLPDDIATI 123
>SB_54171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P+GS E +T+PD++ T+
Sbjct: 51 ARHKAADAISRHPTGSTTPEMMTLPDDIATI 81
>SB_48899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P+GS E +T+PD++ T+
Sbjct: 209 ARHKAADAISRHPTGSTTPEMMTLPDDIATI 239
>SB_36000| Best HMM Match : DUF1379 (HMM E-Value=4.8)
Length = 420
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P+GS E +T+PD++ T+
Sbjct: 272 ARHKAADAISRHPTGSTTPEMMTLPDDIATI 302
>SB_32624| Best HMM Match : rve (HMM E-Value=0.00042)
Length = 415
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P+GS E +T+PD++ T+
Sbjct: 93 ARHKAADAISRHPTGSTTPEMMTLPDDIATI 123
>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
Length = 838
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P+GS E +T+PD++ T+
Sbjct: 286 ARHKAADAISRHPTGSTTPEMMTLPDDIATI 316
>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
Length = 1502
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P+GS E +T+PD++ T+
Sbjct: 999 ARHKAADAISRHPTGSTTPEMMTLPDDIATI 1029
>SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1230
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 601 LHNSVIVRSFLEHNHSPIALALFFVY 678
LH S I ++F + HSP +AL+F Y
Sbjct: 125 LHPSTIGKAFAKKAHSPFFVALYFTY 150
>SB_58368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -2
Query: 188 HFRFAG-PLCEEEELFDAIDGLFGL--LTATGVEEGLESRSVSNLVITDCLCCDDLGPGL 18
H R +G PLC + +G F LT T +E LES ++++L I CDD+ G+
Sbjct: 66 HARSSGSPLCFYLKPVSLSNGRFSFEDLTYTSLEVVLESSTIASLCIFR-RSCDDVMNGI 124
Query: 17 EV 12
EV
Sbjct: 125 EV 126
>SB_1704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ K D + P GS E +T+PD++ T+
Sbjct: 172 ARHKAADAISRHPMGSTTPEMMTLPDDIATI 202
>SB_33645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = -2
Query: 440 STFTSRNINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIV 261
+T T+ I++ + I I++ +I F+IV I +VIP ++IN + + S+
Sbjct: 29 TTTTTTTTTITTTTTTTINIIIIIIIIIIIIFIIVLIIVVVIP-SIINSSMYPPLTSSLY 87
Query: 260 LISSGI 243
++S I
Sbjct: 88 IVSRNI 93
>SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
Length = 391
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2
Query: 461 HLCIADCSTFTSRNINISSCRAIKT----SHFHIRIVLSVISFVIVRAIFIVIPHT 306
H+C D S +N++ S +K + I+I LS I F I R IF+++ ++
Sbjct: 230 HMCTVDISGRKVKNLDYSDVPTLKQESAWARVVIKITLSFIIFWIPRCIFLLLDNS 285
>SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1017
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 175 AKRKCVDPLEAGPSGSAKDEFVTIPDEMRTM 267
A+ D + P+GS E +T+PD++ T+
Sbjct: 432 ARHNAADAISRHPTGSTTPEMMTLPDDIATI 462
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 1 RHEPTSRPGPRSSQQRQSVMTKLETDLDSKPSSTP 105
+H P RP P + ++ +SV + E + S PS TP
Sbjct: 673 KHVPPPRPPPVNKERAESVASCSEDQVYSVPSLTP 707
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 1 RHEPTSRPGPRSSQQRQSVMTKLETDLDSKPSSTP 105
+H P RP P + ++ +SV + E + S PS TP
Sbjct: 452 KHVPPPRPPPVNKERAESVASCSEDQVYSVPSLTP 486
>SB_12450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -2
Query: 458 LCIADCSTFTSRNINISSCRAIKTS-HFHIRIVLS-VISFVI 339
LC+ STFT +I+I C A++ + I + V+SF++
Sbjct: 63 LCLCAVSTFTITSISIDRCLAVRLKMDYPITVTFKRVVSFIV 104
>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
Length = 722
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 374 IRIVLSVISFVIVRAIFIVIPHTLINKLWFHFG 276
I V+ +I I+ I I+I +IN+L+ H G
Sbjct: 684 IVFVIIIIIITIITTIIIIITIAIINRLYHHHG 716
>SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 194 IHWKQVPLVLQKTNL*RYQTR 256
+H++ +P V+QKTNL RY +
Sbjct: 24 VHFRSMPRVVQKTNLTRYNLK 44
>SB_42895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 357 GEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNR 482
G DDS +++T S D SGG + + R+ L+NR
Sbjct: 58 GSDDSTIKVTAVAFSDASDQIFSGGIDNEIKETAGRYQLTNR 99
>SB_39898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = -2
Query: 416 NISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLISSGIVT 237
+I SC ++ +F IR L + +++R IF++ TL + + F + I +SGI +
Sbjct: 31 HIVSC--LRLINFVIR--LHGLFLLLIRGIFLIASVTLDDNYFLGFFAIGITSTTSGI-S 85
Query: 236 NSSFAEPEGPASS 198
+SS + P SS
Sbjct: 86 SSSTSSSSSPTSS 98
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 393 DGSATGDVNISGGEGGAVGDAQVRFGLSNRGHLVVHVGDTSSLNTSAIG 539
+G+A + I+GG GG+V + ++ RGH++ G + NT A G
Sbjct: 2632 NGNAGANSTIAGGSGGSVNITVEK--ITGRGHILAS-GGKGAYNTGAGG 2677
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,577,154
Number of Sequences: 59808
Number of extensions: 412845
Number of successful extensions: 1325
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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