Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0913
(693 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y10931-1|CAA71861.1| 1142|Homo sapiens symplekin protein. 33 1.3
U49240-1|AAC50667.1| 1142|Homo sapiens symplekin protein. 33 1.3
BC006567-1|AAH06567.1| 1142|Homo sapiens SYMPK protein protein. 33 1.3
BC006536-1|AAH06536.1| 1142|Homo sapiens SYMPK protein protein. 33 1.3
X71428-1|CAA50559.1| 525|Homo sapiens FUS gycline rich protein ... 31 5.2
X71427-1|CAA50558.1| 462|Homo sapiens FUS-CHOP protein fusion p... 31 5.2
S75762-1|AAB32714.2| 195|Homo sapiens FUS-CHOP fusion protein p... 31 5.2
S62140-1|AAB27102.1| 526|Homo sapiens TLS protein. 31 5.2
S62138-1|AAB27103.1| 462|Homo sapiens TLS-CHOP protein. 31 5.2
CR456747-1|CAG33028.1| 526|Homo sapiens FUS protein. 31 5.2
BT007131-1|AAP35795.1| 526|Homo sapiens fusion, derived from t(... 31 5.2
BC026062-1|AAH26062.1| 526|Homo sapiens fusion (involved in t(1... 31 5.2
BC002459-1|AAH02459.1| 526|Homo sapiens fusion (involved in t(1... 31 5.2
BC000402-1|AAH00402.1| 526|Homo sapiens fusion (involved in t(1... 31 5.2
AF071213-2|AAC35284.1| 525|Homo sapiens FUS/TLS protein protein. 31 5.2
AF071213-1|AAC35285.1| 526|Homo sapiens FUS/TLS protein protein. 31 5.2
>Y10931-1|CAA71861.1| 1142|Homo sapiens symplekin protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.3
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 254 SSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLE 84
SS + S A P P S + FR GP CE +F ++D GL A ++ LE
Sbjct: 1036 SSSSPSPSPSARPGPPPSEEAMDFREEGPECETPGIFISMDDDSGLTEAALLDSSLE 1092
>U49240-1|AAC50667.1| 1142|Homo sapiens symplekin protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.3
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 254 SSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLE 84
SS + S A P P S + FR GP CE +F ++D GL A ++ LE
Sbjct: 1036 SSSSPSPSPSARPGPPPSEEAMDFREEGPECETPGIFISMDDDSGLTEAALLDSSLE 1092
>BC006567-1|AAH06567.1| 1142|Homo sapiens SYMPK protein protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.3
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 254 SSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLE 84
SS + S A P P S + FR GP CE +F ++D GL A ++ LE
Sbjct: 1036 SSSSPSPSPSARPGPPPSEEAMDFREEGPECETPGIFISMDDDSGLTEAALLDSSLE 1092
>BC006536-1|AAH06536.1| 1142|Homo sapiens SYMPK protein protein.
Length = 1142
Score = 32.7 bits (71), Expect = 1.3
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 254 SSGIVTNSSFAEPEGPASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLE 84
SS + S A P P S + FR GP CE +F ++D GL A ++ LE
Sbjct: 1036 SSSSPSPSPSARPGPPPSEEAMDFREEGPECETPGIFISMDDDSGLTEAALLDSSLE 1092
>X71428-1|CAA50559.1| 525|Homo sapiens FUS gycline rich protein
protein.
Length = 525
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 176 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 218
>X71427-1|CAA50558.1| 462|Homo sapiens FUS-CHOP protein fusion
protein.
Length = 462
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 177 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 219
>S75762-1|AAB32714.2| 195|Homo sapiens FUS-CHOP fusion protein
protein.
Length = 195
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 93 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 135
>S62140-1|AAB27102.1| 526|Homo sapiens TLS protein.
Length = 526
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 177 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 219
>S62138-1|AAB27103.1| 462|Homo sapiens TLS-CHOP protein.
Length = 462
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 177 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 219
>CR456747-1|CAG33028.1| 526|Homo sapiens FUS protein.
Length = 526
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 177 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 219
>BT007131-1|AAP35795.1| 526|Homo sapiens fusion, derived from
t(12;16) malignant liposarcoma protein.
Length = 526
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 177 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 219
>BC026062-1|AAH26062.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 177 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 219
>BC002459-1|AAH02459.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 177 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 219
>BC000402-1|AAH00402.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 177 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 219
>AF071213-2|AAC35284.1| 525|Homo sapiens FUS/TLS protein protein.
Length = 525
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 176 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 218
>AF071213-1|AAC35285.1| 526|Homo sapiens FUS/TLS protein protein.
Length = 526
Score = 30.7 bits (66), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 354 YGEDDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSNRG 485
YG+D S+M G G G+ + SGG GG+ G Q G RG
Sbjct: 177 YGQDQSSMSSGGGSGGGYGNQDQSGG-GGSGGYGQQDRGGRGRG 219
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,551,652
Number of Sequences: 237096
Number of extensions: 2073771
Number of successful extensions: 12323
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12323
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -