Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0913
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63120.1 68416.m07089 cyclin family protein similar to cyclin...    29   2.9  
At1g34550.1 68414.m04294 expressed protein contains Pfam profile...    28   5.1  
At4g35670.1 68417.m05064 glycoside hydrolase family 28 protein /...    28   6.8  
At5g12160.1 68418.m01427 expressed protein similar to unknown pr...    27   8.9  
At4g29220.1 68417.m04180 phosphofructokinase family protein simi...    27   8.9  
At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putat...    27   8.9  

>At3g63120.1 68416.m07089 cyclin family protein similar to cyclin 2
           [Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
           cruzi] GI:12005317; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 221

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 624 SHY-DRIVKWLC*PCSPTGFVLQQVHLIFFL 535
           +HY DRI K+ C  CSP+ FV+  +++  FL
Sbjct: 76  AHYLDRIFKYSC--CSPSCFVIAHIYIDHFL 104


>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616);
           expression supported by MPSS
          Length = 812

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 363 DDSNMEMTGFDGSATGDVNISGGEGGAVGDAQVRFGLSN 479
           DD N +M  F  S T   ++ G  GGA  D  V  G+ N
Sbjct: 89  DDDNAKMAQFRQSGTDRFSVRGNGGGASSD-HVTIGIRN 126


>At4g35670.1 68417.m05064 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 [Vitis vinifera] GI:15081600;
           contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 394

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 488 VTTIR*PKTHLCIADCSTFTSRNINI 411
           +T+I  PK H+ I  C+T    NIN+
Sbjct: 160 ITSIDSPKNHISIKTCNTVAISNINL 185


>At5g12160.1 68418.m01427 expressed protein similar to unknown
           protein (pir||T09909)
          Length = 146

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 387 GFDGSATGDVNISGGEGGAVGDAQVRFGLSNRGHLV 494
           GFD  A  ++   G  G A+GD ++    S+  H++
Sbjct: 62  GFDDGAEAEIKKPGAYGYAIGDNEIEGSSSSTVHVI 97


>At4g29220.1 68417.m04180 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 473

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -2

Query: 209 PASSGSTHFRFAGPLCEEEELFDAIDGLFGLLTATGVEEGLESRSVSNLVITDCLC 42
           P S   THFR AGP   +   F++ D L  ++T  G+  GL      N VI + +C
Sbjct: 69  PDSPRGTHFRRAGP--RQRVYFESDDVLACIVTCGGLCPGL------NTVIREIVC 116


>At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putative
           / CPA-FA synthase, putative similar to cyclopropane
           synthase [Sterculia foetida] GI:21069167; contains Pfam
           profiles PF02353: Cyclopropane-fatty-acyl-phospholipid
           synthase, PF01593: amine oxidase, flavin-containing
          Length = 867

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 168 WTSETKMRRSTGSRSLWFC 224
           WT+  ++ +  G R++WFC
Sbjct: 377 WTASQELHKIQGKRNIWFC 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,430,939
Number of Sequences: 28952
Number of extensions: 289515
Number of successful extensions: 894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)