Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0911
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    29   0.64 
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    27   2.6  
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    26   4.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.9  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -1

Query: 644 PRYLYFTKVIHAMRLCRPKSFPRNISSSNYDLRREE*QIRPTVSTFKQLTNVVHSESSDL 465
           PR    ++V +A++LC PK    +I++    L  +    R + S  ++L +V+  +  D 
Sbjct: 163 PRSPSCSRVFNAVQLCSPKKSKDDITTPKKRLMEDTYSPRESPSKIQRLQDVLLKQLQDT 222

Query: 464 RAL 456
           R L
Sbjct: 223 RLL 225


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/79 (24%), Positives = 37/79 (46%)
 Frame = +2

Query: 98  LINFKTFSLVQNNVSLLFHHSLLYKCNCFIDCKFKVLF*RIMHERECM*ERKVVSTRI*Q 277
           +++   F LVQ+++ +  HH L Y     +  +  +LF     +  C     V +T++  
Sbjct: 180 ILDMDKFLLVQSDLIIPHHHELYYFYINKVQGRDGLLF--DFDKLSCSSPEMVATTQLPS 237

Query: 278 ISVMNLLRKFYCLVTLHYF 334
             + +L++K Y L   H F
Sbjct: 238 QCIPHLVQKSYYLQNRHVF 256


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 416 LNLMKGFIIIHNVKEH 463
           +NL K FI + NVKEH
Sbjct: 39  MNLKKAFIFLDNVKEH 54


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 98   VHSYETLFHANKTLLRFKMMFVTL*CLYLSS 6
            VH  ETL HA+ T   ++  FV   C YL+S
Sbjct: 1645 VHEMETLKHASPTFKAYQ--FVVRICHYLTS 1673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,728
Number of Sequences: 5004
Number of extensions: 52558
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)