Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0911
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0099 + 20070925-20073867                                         29   2.6  
01_03_0054 + 12057600-12057917                                         29   4.6  
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835...    28   8.1  

>11_06_0099 + 20070925-20073867
          Length = 980

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 513 TYSGSYLLFLST*IIITGRDISWKRFRTTQPHGMDNFRKVQI 638
           ++SG++  FL     ++  D+SW +F    P  + NF K++I
Sbjct: 637 SFSGNFPSFLQGWTELSFLDLSWNKFSGNLPTWIGNFSKLEI 678


>01_03_0054 + 12057600-12057917
          Length = 105

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -2

Query: 631 TLRKLSMPCGCVVRNRFHEISLPVIMIYVERNSK*DP 521
           T R+L   C C V++RF E+ LP+++++   ++  DP
Sbjct: 8   TARELLRVC-CEVQSRFQEVELPLLVVHGGDDTLCDP 43


>07_03_1770 -
           29382508-29382591,29382901-29383041,29383134-29383520,
           29383685-29383930,29385396-29385437,29385973-29386461
          Length = 462

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +2

Query: 50  NVVMFYSRGKESHMSVLINFKTFSLVQNNVSLLFHHSLLYKCNCFIDCKFKVL 208
           + ++  S G E ++ +L +F     ++   S+L H+ +  +C C     F+VL
Sbjct: 128 HAIVSSSVGPEYYVGIL-SFVDKDQLEPGCSILMHNKMAVRCQCLYKAAFQVL 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,521
Number of Sequences: 37544
Number of extensions: 278433
Number of successful extensions: 506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)