Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0911
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         29   4.7  
SB_51603| Best HMM Match : TIMP (HMM E-Value=0.00017)                  28   6.2  
SB_25889| Best HMM Match : TIMP (HMM E-Value=0.023)                    28   6.2  
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)                        28   8.3  

>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 481 VNHLTSVLFDIMYNYESFHKIQDERCDY*NCIRNYCT 371
           VN L++   ++M   E    +Q E+C   NC++  CT
Sbjct: 320 VNLLSASTLELMEELEHSQGVQKEQCFEINCLKKVCT 356


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 481 VNHLTSVLFDIMYNYESFHKIQDERCDY*NCIRNYCT 371
           VN L++   ++M   E    +Q E+C   NC++  CT
Sbjct: 268 VNLLSASTLELMEELEHSQGVQKEQCFEINCLKKVCT 304


>SB_51603| Best HMM Match : TIMP (HMM E-Value=0.00017)
          Length = 251

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 249 RSHIHSLSCIIR*NNTLNLQSIKQLHL 169
           R   HSL C++  N  L +QSI Q H+
Sbjct: 40  RDFSHSLCCLVSDNRELGVQSITQHHI 66


>SB_25889| Best HMM Match : TIMP (HMM E-Value=0.023)
          Length = 314

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 249 RSHIHSLSCIIR*NNTLNLQSIKQLHL 169
           R   HSL C++  N  L +QSI Q H+
Sbjct: 285 RDFSHSLCCLVSDNRELGVQSITQHHI 311


>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
          Length = 165

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 143 LLFHHSLLYKCNCFIDCKFKVLF*RIMHERECM 241
           L   H   YK +C++ C  KV +    + R C+
Sbjct: 47  LFIKHKCHYKYHCYLKCSCKVKYYHCRYRRRCV 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,152,159
Number of Sequences: 59808
Number of extensions: 370009
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)