Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0911
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    29   2.4  
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 201  KCCSNE*CTKGNVCESAKLSQR 266
            +C +NE CT G+VCE AK   R
Sbjct: 1183 ECLANEQCTGGSVCEDAKCECR 1204


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 195 NLKCCSNE*CTKGNVCESAKLS 260
           N  C +NE CTKG+VC + K S
Sbjct: 346 NESCQNNEKCTKGSVCYNGKCS 367


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 195 NLKCCSNE*CTKGNVCESAKLS 260
           N  C +NE CTKG+VC + K S
Sbjct: 346 NESCQNNEKCTKGSVCYNGKCS 367


>Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical
           protein F25H2.7 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 359 RYTSCTIVAYAILVITTFVLNLMKGFIIIHNVKEH 463
           RYTS  +V + + VI    L+L KG+I + N  +H
Sbjct: 6   RYTSIGLVTFVVGVILIEELHLGKGYIYLANQYDH 40


>Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical
           protein C08F11.2 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 244 RAQSCLNEDITN-LCDEFA*EILLFSYTSLF 333
           RA +C  E++   +C+    E LLF YT++F
Sbjct: 168 RATNCKKENLAECICESRKKEFLLFGYTAIF 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,982
Number of Sequences: 27780
Number of extensions: 286728
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)