Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0910
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   1.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   1.9  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    26   5.9  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   7.9  

>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 619 RVMVHVVGHRPDRRFFAL*RWSPRSLIVDSCSK 521
           + +V +    PD +FF +  W P  L + SC K
Sbjct: 210 KFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFK 242


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/52 (40%), Positives = 25/52 (48%)
 Frame = +3

Query: 426 VKSAHFLTNRPKSAKSLINQKNRPR*GWCCSSLEQESTIKERGLQRQRAKNR 581
           VK   FLTN   +  SL+ Q NRP      S +E   TI+   L RQ  K R
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRPS-TLFSSDIEYTPTIQ---LNRQVLKTR 722


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 426 VKSAHFLTNRPKSAKSLINQKNRPR*GWCCSSLEQESTIKERGLQRQRAKNRLSGRWPTT 605
           V S++ L    + + SL +QK+ P      SSL  + ++        R    +S RW  T
Sbjct: 110 VGSSNALNKPTRESDSLKHQKSHPMLNSLGSSLSLKKSVSRPPSSMSRTNLDVSSRWDNT 169


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 108 PRRMYAATLISPFEXPRFALDQTHHQRQQAVNDQVN 1
           P R++A     P   PR   ++TH       ND VN
Sbjct: 453 PNRIFAQ---DPHPSPRLKKEETHENGSNLTNDSVN 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,824
Number of Sequences: 5004
Number of extensions: 60554
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)