Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0910
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0258 - 11153709-11156090                                         30   1.5  
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186...    29   4.6  
02_01_0353 + 2545982-2549833                                           29   4.6  
07_03_0418 + 17979504-17980964                                         28   8.1  
07_03_0415 + 17920383-17921843                                         28   8.1  
06_01_0092 - 775290-775691                                             28   8.1  

>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 400 NINAYNLPFAIQVRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 266
           N+N YNL F +  +   + R      +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>06_03_0927 + 26015956-26018230,26018323-26018471,26018550-26018618,
            26018701-26018853,26018927-26019090,26019207-26019354,
            26020348-26020470,26020560-26020647,26020781-26020950
          Length = 1112

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 253  WKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAPEWR 375
            W+ L      A  H  +   G+++    P A+P+SC PEWR
Sbjct: 1038 WELLTGEEPYADLHYGVIIGGIVSNTLRP-AVPDSCDPEWR 1077


>02_01_0353 + 2545982-2549833
          Length = 1283

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 147 LMRPGASYQTYKTPRRMYAATLISPFEXPRFALDQTHHQRQ 25
           ++ P ASYQ  +TP R   AT  +P   P +A+ + +  +Q
Sbjct: 392 ILEPPASYQPIRTPARKLLAT-PTPLGTPLYAIPEENRGQQ 431


>07_03_0418 + 17979504-17980964
          Length = 486

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
 Frame = -3

Query: 412 EF*QNINAYNLPFAIQVRNCWEGRSVRASSLLRQLAKG--GCAARRLSWVTPGFSSHDVV 239
           EF   + A   PF   +R    G S  A +L   +A       AR + W        DV+
Sbjct: 310 EFLHGLVAAGYPFLWVLRPDMVGASQSAGALREAVAAAEKNNKARVVGWAP----QRDVL 365

Query: 238 KRRPVNCNTTHYRANWVPGPAASGTGTVLMSDATWRVLSDLQ 113
           + R V C  TH  A W     A+G G   +    W   +D Q
Sbjct: 366 RHRAVGCFLTH--AGWNSTLEAAGEG---VPTVCWPFFADQQ 402


>07_03_0415 + 17920383-17921843
          Length = 486

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
 Frame = -3

Query: 412 EF*QNINAYNLPFAIQVRNCWEGRSVRASSLLRQLAKG--GCAARRLSWVTPGFSSHDVV 239
           EF   + A   PF   +R    G S  A +L   +A       AR + W        DV+
Sbjct: 310 EFLHGLVAAGYPFLWVLRPDMVGASQSAGALREAVAAAEKNNKARVVGWAP----QRDVL 365

Query: 238 KRRPVNCNTTHYRANWVPGPAASGTGTVLMSDATWRVLSDLQ 113
           + R V C  TH  A W     A+G G   +    W   +D Q
Sbjct: 366 RHRAVGCFLTH--AGWNSTLEAAGEG---VPTVCWPFFADQQ 402


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 334 RASSLLRQLAKGGCAARR 281
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,983,651
Number of Sequences: 37544
Number of extensions: 437679
Number of successful extensions: 1067
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)