Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0910
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    28   7.3  
U43375-7|AAA83624.1|  271|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 295 IPLSPAGVIAKRPAPIALPNS-CAP 366
           IP++PA V+A R  P ALP S C P
Sbjct: 145 IPVAPAPVVAGRLIPQALPGSPCEP 169


>U43375-7|AAA83624.1|  271|Caenorhabditis elegans Hypothetical
           protein K09C4.4 protein.
          Length = 271

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 542 NSGLLFQTGTTPTLSRSILLIYKGFCR 462
           N  L+   G TPT++RS LLI    C+
Sbjct: 42  NHTLMTHYGITPTVTRSALLILSALCQ 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,309,337
Number of Sequences: 27780
Number of extensions: 352041
Number of successful extensions: 778
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)