Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0910
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    29   2.2  
At5g27010.1 68418.m03222 hypothetical protein                          29   3.9  
At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.8  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   6.8  
At2g35050.1 68415.m04300 protein kinase family protein contains ...    28   6.8  
At3g56130.1 68416.m06238 biotin/lipoyl attachment domain-contain...    27   8.9  
At1g45207.2 68414.m05186 remorin family protein Since this genom...    27   8.9  

>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 548 TWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVK 652
           T TPTS   G+K +++A  ++V   P  V W RG ++
Sbjct: 777 TATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVME 813


>At5g27010.1 68418.m03222 hypothetical protein
          Length = 863

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 545 RTWTPTSKGEKPSIRAMAHYVNHHPNQVFWGRGAVKH*IRE 667
           RT  P +K  K ++  +   + HHP ++   + A  H +RE
Sbjct: 74  RTGHPNAKVRKDALHGIKDLLKHHPAELLSNKYATTHKLRE 114


>At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 488

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 502 RVGVVPVWNKSPLLKNVDSNVKGRKT 579
           R+  VPVW   P+LK+ D  V  R T
Sbjct: 244 RITGVPVWPVGPVLKSPDKKVGSRST 269


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 554 TPTSKGEKPSIRAMAHYVNHHP 619
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At2g35050.1 68415.m04300 protein kinase family protein contains Pfam
            profile: PF00069 Eukaryotic protein kinase domain
          Length = 1257

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +1

Query: 253  WKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAPEWRM 378
            W+ L      A  H      G++     P  +PN C PEWRM
Sbjct: 1173 WEILTGEEPYANMHYGAIIGGIVNNTLRP-TVPNYCDPEWRM 1213


>At3g56130.1 68416.m06238 biotin/lipoyl attachment domain-containing
           protein low similarity to SP|Q06881 Biotin carboxyl
           carrier protein of acetyl-CoA carboxylase (BCCP)
           {Anabaena sp.}; contains Pfam profile PF00364:
           Biotin-requiring enzyme
          Length = 281

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 352 NSCAPEWRMANCKR*YFVKIRVK 420
           NSC P WR++N    Y + +R K
Sbjct: 36  NSCVPRWRLSNRNSNYRLVLRAK 58


>At1g45207.2 68414.m05186 remorin family protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 555

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 27/86 (31%), Positives = 42/86 (48%)
 Frame = -3

Query: 403 QNINAYNLPFAIQVRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSSHDVVKRRPV 224
           QN+++    F++ +R C E RS R+ +L ++L      +  LS VT        VKR  V
Sbjct: 118 QNLDSARSSFSVALRECQERRS-RSEALAKKLDYQRTVSLDLSNVTSTSPRVVNVKRASV 176

Query: 223 NCNTTHYRANWVPGPAASGTGTVLMS 146
           + N    +++  P P   GT T L S
Sbjct: 177 STN----KSSVFPSP---GTPTYLHS 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,872
Number of Sequences: 28952
Number of extensions: 330524
Number of successful extensions: 708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)