Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0909
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   1.9  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    27   2.5  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   4.4  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   5.9  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.9  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 213 IWLRFIYLFCVPDSLTM-RCFRIIHSFWDTLYIRNIYV 323
           +WL +I  +C P + TM R   I HSF   L  ++ +V
Sbjct: 867 LWLFYIVRYCEPQTYTMTRLNDIYHSFLSFLVTQDDFV 904


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 487 PNNNYSNFRNDIY 525
           PNNNYS FR D Y
Sbjct: 217 PNNNYSKFRTDNY 229


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 119 ITFINNYTSYLYDFLHIPCSGM--EHIIFFKIRNLAEIYL 232
           ++FIN + S L D L   C+G   +  IFF +     I L
Sbjct: 225 LSFINRHPSILKDMLLFACTGSVGQLFIFFTLEKFGSITL 264


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +2

Query: 44  KVFLGSTQIKDKEKIPNFIIKI*VQITFINNYTSYLYDFLHIPCSGMEHIIFFKIRNLAE 223
           +VF+G +       +P F +++      I  + S+    LH+PCS   H + F       
Sbjct: 11  EVFVGFSLCTLVISVPFFFLQM-TPFYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIA 69

Query: 224 IYLFILC 244
            Y + LC
Sbjct: 70  CYHYSLC 76


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 244 SPIALL*DVSGLSILS-GTLCIYVIFMYIYSKYLIF 348
           +PI  L D+ GL     G L +YV+F Y  S +L++
Sbjct: 178 NPIGNLSDIPGLPQPGDGFLYLYVLFTYFISIFLLY 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,847
Number of Sequences: 5004
Number of extensions: 59450
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)