Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0909
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893...    30   2.0  
08_01_0315 - 2780657-2780704,2781555-2781608,2781826-2781976,278...    29   3.5  
04_04_0582 + 26369537-26369914,26371598-26371887,26371985-263721...    29   3.5  
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653...    28   6.0  

>04_03_0620 -
           18088287-18088495,18089174-18089210,18089315-18089395,
           18089771-18089838,18093361-18094219
          Length = 417

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 254 PYYEMFQDYPFFLGHSVYT*YLCTYIV 334
           PYY++F D  F    S+Y   LC+Y V
Sbjct: 172 PYYQVFFDQAFNTSDSIYNATLCSYAV 198


>08_01_0315 -
           2780657-2780704,2781555-2781608,2781826-2781976,
           2782650-2782888,2783141-2783272,2783594-2783658,
           2784289-2784377,2784664-2784902
          Length = 338

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 347 KIRYLLYMYINITYIQSVPERMDNPETSHSKA 252
           ++RYLLY     TY+ +  ER D    SH  A
Sbjct: 176 QVRYLLYSLALATYVTAARERQDGAFASHIAA 207


>04_04_0582 +
           26369537-26369914,26371598-26371887,26371985-26372156,
           26372271-26372393,26372499-26372627,26372785-26372979,
           26373128-26373214,26373296-26373568,26374166-26374273,
           26374363-26374686
          Length = 692

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 277 LSILSGTLCIYVIFMYI-YSKYLIFSINLHNST*TTKSI 390
           +  LSGT+C +++ ++  +S Y+ F +NL+ S    +S+
Sbjct: 489 ICFLSGTICYFMVRLHPGFSHYIFFVLNLYASVTVVESL 527


>11_04_0305 -
           16162063-16162096,16162282-16164365,16165283-16165351,
           16168317-16169288,16169548-16169650,16170427-16170509
          Length = 1114

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 359 KLILKIRYLLYMYINITYIQSVPERMDN 276
           K ILK+R L Y+ +  T+I ++PE   N
Sbjct: 701 KSILKLRQLRYLSLGDTHINAIPEGFHN 728


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,769
Number of Sequences: 37544
Number of extensions: 295972
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)