Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0909
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060936-1|AAL28484.1|  585|Drosophila melanogaster GM07803p pro...    32   0.85 
AE014134-1643|AAS64663.1| 1494|Drosophila melanogaster CG33298-P...    32   0.85 
AE014134-1642|AAS64662.1| 1517|Drosophila melanogaster CG33298-P...    32   0.85 

>AY060936-1|AAL28484.1|  585|Drosophila melanogaster GM07803p
           protein.
          Length = 585

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 162 CIFLAAVWNISFFLKYVIWLRFIYLFCVP-DSLTMRCFRIIHSFW 293
           C      W +   L  V+ L   YLF +  DS+ M CF +  S+W
Sbjct: 453 CAIEIRSWTVLHVLSIVLSLGSFYLFAIVYDSVCMNCFGVRSSYW 497


>AE014134-1643|AAS64663.1| 1494|Drosophila melanogaster CG33298-PA,
            isoform A protein.
          Length = 1494

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 162  CIFLAAVWNISFFLKYVIWLRFIYLFCVP-DSLTMRCFRIIHSFW 293
            C      W +   L  V+ L   YLF +  DS+ M CF +  S+W
Sbjct: 1385 CAIEIRSWTVLHVLSIVLSLGSFYLFAIVYDSVCMNCFGVRSSYW 1429


>AE014134-1642|AAS64662.1| 1517|Drosophila melanogaster CG33298-PB,
            isoform B protein.
          Length = 1517

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 162  CIFLAAVWNISFFLKYVIWLRFIYLFCVP-DSLTMRCFRIIHSFW 293
            C      W +   L  V+ L   YLF +  DS+ M CF +  S+W
Sbjct: 1385 CAIEIRSWTVLHVLSIVLSLGSFYLFAIVYDSVCMNCFGVRSSYW 1429


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,136,616
Number of Sequences: 53049
Number of extensions: 547745
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)