Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0909
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92829-10|CAB07350.2|  319|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    27   9.5  
AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z92829-10|CAB07350.2|  319|Caenorhabditis elegans Hypothetical
           protein F10A3.15 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 174 AAVWNISFFLKYVIWLRFIYLFCVPDSLTMRCFRIIHSFWDTLYIRN 314
           A +W IS  + +VIW  F   F +     M+   +I  FW+   +++
Sbjct: 134 APIWVISLSVNFVIW--FFCFFNLNSPSPMKDEELIPEFWEAYCLKS 178


>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 246 PDSLTMRCFRIIHSFWDTLY 305
           P  +T+RCF+  HSF+ T Y
Sbjct: 569 PREITIRCFQESHSFYVTFY 588


>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +1

Query: 283 ILSGTLCIYVIFMYIYSKYLIFSI 354
           ++ G  C+YVI+  +++K +IF++
Sbjct: 171 VILGIFCVYVIYPMLFTKPIIFNL 194


>AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical
           protein T24C4.6a protein.
          Length = 860

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 359 KLILKIRYLLYMYINITYIQSVPERMDNP 273
           KLI+ ++YL ++ I+ T + + P   DNP
Sbjct: 353 KLIVSLKYLTHLDISSTNLATQPSSHDNP 381


>AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical
           protein T24C4.6b protein.
          Length = 895

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 359 KLILKIRYLLYMYINITYIQSVPERMDNP 273
           KLI+ ++YL ++ I+ T + + P   DNP
Sbjct: 353 KLIVSLKYLTHLDISSTNLATQPSSHDNP 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,205
Number of Sequences: 27780
Number of extensions: 311234
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)