Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0909
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03720.1 68416.m00377 amino acid permease family protein simi...    29   2.9  
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    29   3.8  
At5g51250.1 68418.m06354 kelch repeat-containing F-box family pr...    28   5.0  
At5g17890.1 68418.m02098 LIM domain-containing protein / disease...    27   8.8  

>At3g03720.1 68416.m00377 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 600

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 356 LILKIRYLLYMYINITYIQSVPERMDNPETSHSKAIGDT 240
           + L I  +LYM +++  +  VP    NP+T  S A GD+
Sbjct: 265 IALLICCILYMLLSVVIVGLVPYYSLNPDTPISSAFGDS 303


>At2g48050.1 68415.m06014 expressed protein ; expression supported by
            MPSS
          Length = 1500

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 162  CIFLAAVWNISFFLKYVIWLRFIYLFCVPDSLTMRCFRIIHSFWDTLYIRNIYVH 326
            C  +A +WN S      +   F+Y  CV    T   F +I   +  +YI   Y++
Sbjct: 1002 CFIIAFLWNFSLLSMVYLAALFLYALCVHTGPT-HIFWVIMLMYTEIYILLQYLY 1055


>At5g51250.1 68418.m06354 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 368

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = -2

Query: 337 IYYICT*ILRIYRVSQKEWIILKHLIVRLSGTQNK*INLS----QITYFKKNDMFHTAAR 170
           ++YI   + R Y    + W ILK L+   S  +N  + L+    ++    + D     A 
Sbjct: 260 LFYIHRGVFRWYDTKLRMWRILKGLLGLPSLPENMFVRLADYGGKMAVLWEEDRPSCGAG 319

Query: 169 NMQEIV*VASVIIYKSYLNLNFDNEIWYF 83
              E++   +VI  K +LN +F  ++ +F
Sbjct: 320 GRDEMMIWCAVIALKRHLNFSFWGKVEWF 348


>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
           resistance protein-related low similarity to disease
           resistance protein RPP4 [Arabidopsis thaliana]
           GI:20270890; contains Pfam profiles PF00412: LIM domain,
           PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1613

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 29  PQNKKKVFLGSTQIKDKEKIPN 94
           P+N KK+++G T I++  ++PN
Sbjct: 791 PRNLKKLYVGGTAIRELPQLPN 812


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,299
Number of Sequences: 28952
Number of extensions: 268728
Number of successful extensions: 409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)