Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0907
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1PJJ2 Cluster: Putative uncharacterized protein; n=1; ...    37   0.40 
UniRef50_A6UND1 Cluster: Tetratricopeptide TPR_2 repeat protein;...    35   1.6  
UniRef50_Q9U2Z6 Cluster: Putative uncharacterized protein duo-3;...    35   2.2  
UniRef50_A2ECG4 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_Q6TY95 Cluster: NADH dehydrogenase subunit 2; n=1; Xiph...    33   8.7  
UniRef50_Q22VC7 Cluster: Putative uncharacterized protein; n=2; ...    33   8.7  

>UniRef50_Q1PJJ2 Cluster: Putative uncharacterized protein; n=1;
           uncultured Prochlorococcus marinus clone HOT0M-10G7|Rep:
           Putative uncharacterized protein - uncultured
           Prochlorococcus marinus clone HOT0M-10G7
          Length = 119

 Score = 37.1 bits (82), Expect = 0.40
 Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 138 TGSFKNLFA-IILANSVIFLLPK*FQFSMQYF*YLLLFTKIYLPRAYYPIIKY 293
           TGS  NL   I +   +I L+ K  Q S +YF +L LF  IYLP A Y I KY
Sbjct: 58  TGSLFNLILNISIVILIINLVIKRKQLSKKYFIFLNLFLFIYLPIALYFIFKY 110


>UniRef50_A6UND1 Cluster: Tetratricopeptide TPR_2 repeat protein;
           n=1; Methanococcus vannielii SB|Rep: Tetratricopeptide
           TPR_2 repeat protein - Methanococcus vannielii SB
          Length = 388

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 376 YYYISINY*YMQT*YNSSM*CTNNVVLHSNFYKFPNFVMLVIFKRFDHI 522
           Y++I  NY Y    YN S+ C N  +     YK   F++ ++  RFD I
Sbjct: 94  YWFIKGNYYYRLKQYNDSLDCYNTALKIDPNYKSAKFMISIVETRFDEI 142


>UniRef50_Q9U2Z6 Cluster: Putative uncharacterized protein duo-3;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein duo-3 - Caenorhabditis elegans
          Length = 975

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +2

Query: 92  QYVP--IYRLPHFSCLVHREFQKFVCYNIG---KFSDIFVAKMISIFNAIFLISTFIYEN 256
           Q VP  I  L   + + ++  + F+C+N G   K SD      +SI N  + I   +  N
Sbjct: 406 QVVPDEIKHLDPLNSIRYKTERSFICFNCGHEEKSSDCGWILPLSISNNDYGIIELLESN 465

Query: 257 LSTTRILSYNKI*QSCVCDN 316
             TT  L  NKI  SC C+N
Sbjct: 466 FKTT--LETNKICSSCSCEN 483


>UniRef50_A2ECG4 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 318

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +2

Query: 122 FSCLVHREFQKFVCYNIGKFSDIFVAKMISIFNAIFLISTFIYENLSTTRIL 277
           F  L+   +  F  YNI  FS IF   MI IF+ IF++  FI+ N  +  +L
Sbjct: 111 FLFLIDGPWLVFCYYNIPIFSTIFDI-MIQIFHIIFILYMFIFFNSKSRNVL 161


>UniRef50_Q6TY95 Cluster: NADH dehydrogenase subunit 2; n=1;
           Xiphinema americanum|Rep: NADH dehydrogenase subunit 2 -
           Xiphinema americanum
          Length = 279

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +2

Query: 455 YILIFINFQIL*CW*YSKDLTT----YQRFIKYFRYFYVTIAIFVPKFVGTSGPLLQ*FP 622
           YILIF+  + L  W +S  LTT    Y     YF   ++ I    P+ +  S  L   FP
Sbjct: 23  YILIFLVLEWL-SWVFSITLTTLSMKYLLIQSYFSLVFLIIIFMAPELIIFSLLLKMGFP 81

Query: 623 DFPEYFLLLYKHF 661
            F  + + L+K F
Sbjct: 82  PFYNWAITLFKFF 94


>UniRef50_Q22VC7 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1710

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
 Frame = +2

Query: 41  YSALLAVRFCSNVVFKEQYVPIYRLPHFSCLVHREFQKFVCYNIGKF----SDIFVAKMI 208
           YS+   +    N++F + Y+ +     + CL    FQ  +CY +  F    SDI +  ++
Sbjct: 22  YSSFYFLLETINLIFNQHYLSLDINQIYFCLTISSFQISICYLVVIFIFNSSDIILICIL 81

Query: 209 SIFNAIFLISTF-IYENLSTTRILSYNKI*QSCVCDNF 319
           ++  +I LI+   I+ N       S NK  QSC   +F
Sbjct: 82  TVPLSIKLINKLKIFRNQYLIDQFSNNKDFQSCNQQSF 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,995,676
Number of Sequences: 1657284
Number of extensions: 13009189
Number of successful extensions: 27380
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27371
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)