Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0907
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    27   1.9  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   7.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.8  

>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -2

Query: 441 GTLHTGIILCLHILIIDRYIVICVNQNYF*TKLS*KQLER*KLSHTQDCYILL*DNMRVV 262
           GTL T +I C  + +I+ Y     N N+F      K+LE     +   C +LL    R +
Sbjct: 77  GTLQTMLIFCCTLRMIEHYEKSLSNINFFSLSNDLKRLE----EYNTSCSVLLSLYQRQL 132

Query: 261 DKFS 250
            K S
Sbjct: 133 KKIS 136


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 660 KCLYSKRKYSGKSGNYWSKGPEVPTNFGTNI 568
           KCL+S+  Y+G+ G   S   EV  +F + +
Sbjct: 204 KCLFSRSGYTGEDGFEVSIPEEVSVDFASTL 234


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 436  CTNNVVLHSNFYKFPNFVMLVIF-KRFDHISTF 531
            CT  + L  N   F N +MLV+  K  DH   F
Sbjct: 1628 CTEIMTLPGNVISFSNILMLVVLHKIVDHREAF 1660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,198
Number of Sequences: 5004
Number of extensions: 62375
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)