Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0907
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    29   4.6  
04_01_0529 - 6921152-6921544                                           29   4.6  

>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 480 WKFIKIRM*NHVVGTLHTGIILCLHILIIDR 388
           WK+ K    N + G+ H G   C+  LII R
Sbjct: 198 WKYSKFLEINSIPGSCHFGSFCCIFALIISR 228


>04_01_0529 - 6921152-6921544
          Length = 130

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -2

Query: 273 MRVVDKFS*IKVDIKNIALKIEIILATKISLN---LPIL*QTNF*NSLCTKQLKCGNRYI 103
           MR+  K   +K   ++ AL + + LAT  +     +P L ++   + LC    K GN + 
Sbjct: 20  MRISYKVMAVKARSRHDAL-VALPLATSATFVGEVIPFLVRSGCPHILCLSHKKLGNAFA 78

Query: 102 GTYCSLKTTLEQ 67
             YC  + T++Q
Sbjct: 79  TCYCRARMTMQQ 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,922,789
Number of Sequences: 37544
Number of extensions: 302250
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)