Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0907
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_50644| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_44442| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_40397| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_38702| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_20074| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_13845| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_48137| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_46024| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_43070| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_34672| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_28251| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_28130| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_24474| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_20843| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
SB_6344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_1471| Best HMM Match : Chromo (HMM E-Value=0.47) 28 8.2
>SB_56213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.9 bits (59), Expect = 8.2
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Frame = +2
Query: 164 YNIGKFSDIFVAKMISIFNAIFLISTF-IYENLSTTRILSYNKI*QSCVCDNFYLSSCF* 340
YNI S ++ IS + I IST +ST +S S + F +S+
Sbjct: 101 YNISTISTVYTISTISTVSTISTISTVSTISTISTVSTISTIST-VSTISTIFTVSTIST 159
Query: 341 LSLV*K*F*LTHITIYRSIINICKHNIIPVCSVPTTWFYILIFINFQ 481
+S + + +I+ ++ + + I S +T F I+I IN Q
Sbjct: 160 VSTISTISTVYNISTISTVSTVSTISTISTVSTISTVFNIIIIINIQ 206
>SB_50644| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_44442| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_40397| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 155
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_38702| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 155
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_20074| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 189
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_13845| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 97
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_48137| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 155
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_46024| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_43070| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 96
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_34672| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_28251| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 189
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 16 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 58
>SB_28130| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_24474| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 155
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_20843| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 215
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
>SB_6344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 16 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 58
>SB_1471| Best HMM Match : Chromo (HMM E-Value=0.47)
Length = 236
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 643 KEIFWKIRKLLEQRP*GAYKFWHKYSDR-NIKISEILNKTLIC 518
+E W+I ++L A+ W YSDR N +S LN L C
Sbjct: 42 EEKVWEIERVLNVEGDYAFVKWKGYSDRYNSTVSLSLNPQLSC 84
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,607,508
Number of Sequences: 59808
Number of extensions: 400710
Number of successful extensions: 692
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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