Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0907
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    35   0.063
AC024882-12|AAF60928.2|  347|Caenorhabditis elegans Seven tm rec...    29   4.1  
AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +2

Query: 92  QYVP--IYRLPHFSCLVHREFQKFVCYNIG---KFSDIFVAKMISIFNAIFLISTFIYEN 256
           Q VP  I  L   + + ++  + F+C+N G   K SD      +SI N  + I   +  N
Sbjct: 406 QVVPDEIKHLDPLNSIRYKTERSFICFNCGHEEKSSDCGWILPLSISNNDYGIIELLESN 465

Query: 257 LSTTRILSYNKI*QSCVCDN 316
             TT  L  NKI  SC C+N
Sbjct: 466 FKTT--LETNKICSSCSCEN 483


>AC024882-12|AAF60928.2|  347|Caenorhabditis elegans Seven tm
           receptor protein 163 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 533 IKYFRYFYVTIAIFVPKFVGT 595
           +KYF+  Y+ + +FVP FVGT
Sbjct: 127 LKYFQGGYLVVWLFVPLFVGT 147


>AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical
           protein C18H7.6 protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 600 GLCSSNFLIFQNISFYYINIFRCKL 674
           GLC+ NF +FQNI F    +F C L
Sbjct: 369 GLCNPNFNVFQNIFF---QLFYCAL 390


>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -1

Query: 205 HFGNKNITEFANIIANKFLKLPVH*TAEVRQSI 107
           H G +N++E  N++  K+L L +H +  +++++
Sbjct: 633 HAGQQNVSEAFNVLREKYLGLVMHQSGTLQETV 665


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,538,602
Number of Sequences: 27780
Number of extensions: 342000
Number of successful extensions: 829
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)