Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0907
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         27   0.17 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    27   0.17 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    27   0.17 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.90 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    25   0.90 

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 530 FIKYFRYFYVTIAI-FVPKFVGTSGPLLQ*FPDF 628
           F+   RY  V  ++  + K VG  GPLLQ +PD+
Sbjct: 77  FVTMLRYNGVPSSLNVISKKVGDGGPLLQPYPDW 110


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 530 FIKYFRYFYVTIAI-FVPKFVGTSGPLLQ*FPDF 628
           F+   RY  V  ++  + K VG  GPLLQ +PD+
Sbjct: 77  FVTMLRYNGVPSSLNVISKKVGDGGPLLQPYPDW 110


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 530 FIKYFRYFYVTIAI-FVPKFVGTSGPLLQ*FPDF 628
           F+   RY  V  ++  + K VG  GPLLQ +PD+
Sbjct: 77  FVTMLRYNGVPSSLNVISKKVGDGGPLLQPYPDW 110


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 597 QGLCSSNFLIFQNISFYYINIFRCKLFYW 683
           +GL S+++L+   I  Y++ +F     YW
Sbjct: 209 RGLLSASYLVCYGIWVYFVPLFLIIYSYW 237


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 597 QGLCSSNFLIFQNISFYYINIFRCKLFYW 683
           +GL S+++L+   I  Y++ +F     YW
Sbjct: 85  RGLLSASYLVCYGIWVYFVPLFLIIYSYW 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,860
Number of Sequences: 438
Number of extensions: 4772
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)