Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0907
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66520.1 68414.m07558 formyltransferase, putative similar to ...    30   1.7  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    28   6.7  

>At1g66520.1 68414.m07558 formyltransferase, putative similar to
           methionyl-tRNA formyltransferase [strain N315-
           Staphylococcus aureus] SWISS-PROT:Q99UQ2
          Length = 355

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 178 FANIIANKFLKLPVH*TAEVRQSI 107
           + NI+  KFLK+PVH T  +  S+
Sbjct: 120 YGNILPTKFLKIPVHGTVNIHPSL 143


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 147 NSLCTKQLKCGNRYIGTYCSLKTTLEQNLTASRAE*CESLE 25
           ++LC   L CGN Y   +C        +L   R+E CE  +
Sbjct: 596 DNLCGNPLPCGNHYCSYFCHALDIRSSSLD-KRSESCEKCD 635


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,906,361
Number of Sequences: 28952
Number of extensions: 278836
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)