Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0906
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.0  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    27   1.8  

>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -2

Query: 237 MNKQAILESYLFKGNRFFVI*FSNHPFNISRRCVK 133
           M++Q IL+ Y  + NRFF +   N    ISR C+K
Sbjct: 123 MSEQLILQKY--QKNRFFFMSSINALIRISRNCIK 155


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 210 YLFKGNRFFVI*FSNHPFNISRRCVKDE 127
           +L+K   FFV  + ++PFN  + C  DE
Sbjct: 323 FLYKAMDFFVREYGSYPFNSFKLCFVDE 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,706
Number of Sequences: 5004
Number of extensions: 48504
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)