Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0906
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-12|AAC77504.2|  613|Caenorhabditis elegans Hypothetical p...    36   0.019
Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical p...    28   5.0  
AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U00043-12|AAC77504.2|  613|Caenorhabditis elegans Hypothetical
           protein T26A5.1 protein.
          Length = 613

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 529 LDFIIGGYFYGTRYILY*YLFYVNNKISIVIFHKHNGAIIIYLLSFLKCICL 374
           L F+ G Y Y T Y +   +F++NN+  +V    H+G   ++   F +CI L
Sbjct: 394 LFFLAGEYIYSTAYAI---MFFLNNEFPLVAREYHDGLYNLWTYYFARCISL 442


>Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical
           protein C01G10.1 protein.
          Length = 1204

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 404 INDYR-AVMLVKNYNRYLVIDIKQILI*NISSTVKITPNNKIKN 532
           I D++ A+    NY +YL    KQ+   NI+S + I PN  IK+
Sbjct: 420 IQDFQQAISPATNYMKYLAQIRKQVSYININSILTIRPNRTIKS 463


>U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical
           protein B0244.5 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -1

Query: 637 CNS*VNQCFIIKRP*VIILQS*YLKK*MCLVYLTFILDFIIGGYF 503
           C +  NQC +I+   V I+Q+      +C+ +  F++ FI+ GY+
Sbjct: 21  CTNTTNQCVLIQD--VGIIQAIDFWANLCIPFTLFVIAFILNGYY 63


>U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical
           protein T28A11.5 protein.
          Length = 194

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 626 SKPMFYHKKTVGNNITKLIFKKIDVSRIFNFYS*FYY 516
           SK   Y +   G N T+L FKK  V    NF +  Y+
Sbjct: 22  SKTSIYIESGTGTNCTELTFKKFFVCLYVNFMAKMYF 58


>AF000194-1|AAK39376.4|  386|Caenorhabditis elegans Hypothetical
           protein ZC328.2 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 385 CICLFNATKKNVLTNYLLALT*IIENRSTLGNHK 284
           C+C ++A +++VLT ++      I   S LG H+
Sbjct: 306 CVCNYSARRRDVLTRHMSTRHQAIAPPSILGTHR 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,111,337
Number of Sequences: 27780
Number of extensions: 260417
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)