Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0906
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   1.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.4  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 183 QKICFL*KDSSLKLPVYSLKLRNFVQSEKKI 275
           Q ICF+ KD +    +Y LKL  F   ++ I
Sbjct: 22  QVICFVCKDITSTSALYRLKLYLFCDYDRDI 52


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 131 SFTHRRLILKG*FEN*ITKNLFPLK 205
           S T  RLI  G F+N +T  + PLK
Sbjct: 298 SVTSVRLISSGFFDNFVTVQIQPLK 322


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -3

Query: 347 YKLLTSAYLDY*----KSEHTR*S*MKRNFFF*LNKISE 243
           + L+   +LDY     K +H   + + RN++F  NKI E
Sbjct: 364 WDLIAPYFLDYNYTIPKEKHVEVARLIRNYYFESNKIDE 402


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -3

Query: 347 YKLLTSAYLDY*----KSEHTR*S*MKRNFFF*LNKISE 243
           + L+   +LDY     K +H   + + RN++F  NKI E
Sbjct: 364 WDLIAPYFLDYNYTIPKEKHVEVARLIRNYYFESNKIDE 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,135
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)