Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0906
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11580.1 68417.m01856 F-box family protein predicted protein,...    30   1.5  
At4g38500.1 68417.m05444 expressed protein contains Pfam profile...    28   4.7  

>At4g11580.1 68417.m01856 F-box family protein predicted protein,
           Caenorhabditis elegans, PIR2:S44609 ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 333

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 608 HKKTVGNNITKLIFKKIDVSRIFNF 534
           H KT+ N +     +++DVSRIFNF
Sbjct: 50  HNKTLWNTVDLTNLQELDVSRIFNF 74


>At4g38500.1 68417.m05444 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 499

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -2

Query: 312 KIGAHSVIINEAQFFFLIEQNF*VLMNKQAILESYLFKGNRFFVI*FSNHPFNI 151
           KI  H  +  EAQ+   I+    ++++   ILE YL++G   F I    H  NI
Sbjct: 282 KILTHR-LFPEAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRNI 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,352
Number of Sequences: 28952
Number of extensions: 210272
Number of successful extensions: 274
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)