Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0905
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   6.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   6.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   6.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = +2

Query: 593 MVFYISGT*DSLQIVLQWVHSNITLHQLHQW 685
           ++F ++ +  S  ++L + H N   H++ +W
Sbjct: 301 IMFMVASSVVSTILILNYHHRNADTHEMSEW 331


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 190 LSNTTGSSTACSCC 149
           +++TTG S  C CC
Sbjct: 81  VASTTGFSKECYCC 94


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 257 GFALDWCPTESGMLATGDCRRDIH 328
           GF L W P  +  L    CR  IH
Sbjct: 17  GFILCWLPFFTMYLVRAFCRNCIH 40


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 190 LSNTTGSSTACSCC 149
           +++TTG S  C CC
Sbjct: 81  VASTTGFSKECYCC 94


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 257 GFALDWCPTESGMLATGDCRRDIH 328
           GF L W P  +  L    CR  IH
Sbjct: 465 GFILCWLPFFTMYLVRAFCRNCIH 488


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 377 GVVGLQSKCHLHLVSIYECLFCSLQLPAYLIQ*DTNRERNPLLMPV 240
           G V +     +HLV     L C++ L   L + D   +  PL  PV
Sbjct: 177 GAVDIAGSGAVHLVGGSSALACAIMLGPRLGRYDNGIDPLPLGCPV 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,387
Number of Sequences: 438
Number of extensions: 4727
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)