Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0904
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    29   0.48 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   4.5  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   4.5  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   7.9  

>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 607 RVMVHVVGHRPDRRFFAL*RWSPRSLIVDSCSKWNN 500
           + +V +    PD +FF +  W P  L + SC K+ +
Sbjct: 210 KFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFKYGS 245


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/52 (40%), Positives = 25/52 (48%)
 Frame = +3

Query: 414 VKSAHFLTNRPKSAKSLINQKNRPR*G*VLFHLEQESTIKERGLQRQRAKNR 569
           VK   FLTN   +  SL+ Q NRP     LF  + E T   + L RQ  K R
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRPS---TLFSSDIEYTPTIQ-LNRQVLKTR 722


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 307 LRQLAKGGCA--ARRLSWVTQGFPSHDVV 227
           L QL+  GC   ++ + W+T+ FPS +V+
Sbjct: 194 LTQLSVNGCGLNSKDVQWITETFPSLEVL 222


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 439 IGRNRQNPL*IKRIDRDRVECCSIWNK 519
           IG    N L +KR +R   +  S+WN+
Sbjct: 590 IGTTNSNLLRLKRSNRTAAQTASVWNR 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,681
Number of Sequences: 5004
Number of extensions: 62322
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)