Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0904
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979 36 0.023
05_03_0258 - 11153709-11156090 30 1.5
12_01_0359 + 2736797-2737050,2737801-2738153,2738583-2738821,273... 29 2.6
07_03_0418 + 17979504-17980964 29 3.5
07_03_0415 + 17920383-17921843 29 3.5
08_02_0132 + 12908995-12909437,12909727-12910211,12910417-129109... 28 6.1
01_06_1194 - 35313132-35313154,35314462-35314604,35314751-353154... 28 6.1
01_03_0062 - 12140514-12141851 28 6.1
07_03_0414 + 17892133-17893590 28 8.1
06_01_0092 - 775290-775691 28 8.1
>04_03_0862 + 20389903-20390247,20392408-20392483,20392924-20392979
Length = 158
Score = 36.3 bits (80), Expect = 0.023
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = -1
Query: 304 RQLAKGGCAARRLSWVTQGFPSHDVVKRRPVNCNTTH----YRANWVPGPHHQRKRHDGG 137
R+ ++ CA S ++ P H + +R P C T+H RA + P H +KR DGG
Sbjct: 42 RRESRRRCALGGASAASESPPLH-LYQRLPKCCITSHRCSTLRAGY-PADLHGQKRRDGG 99
Query: 136 SENRAAPAKGEGNTKPV 86
R PA N +PV
Sbjct: 100 GVPREEPAATRRNRRPV 116
>05_03_0258 - 11153709-11156090
Length = 793
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 388 NINAYNLPFAIQVRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 254
N+N YNL F + + + R +L ++++ GC R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431
>12_01_0359 +
2736797-2737050,2737801-2738153,2738583-2738821,
2738916-2739035,2739115-2739162
Length = 337
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = -1
Query: 229 VKRRPVNCNTTHYRANWVPGPHHQRKRHDGGSENRAAPAKGEGNTKPVIQTFTDKS 62
+K++ C+T+ + NWV H +RK+ ++N A E + +++ T +S
Sbjct: 252 LKKKETRCSTSKRKKNWVDKLHKKRKKSLRYAKNGNEVAHPEPLEEDILENSTKES 307
>07_03_0418 + 17979504-17980964
Length = 486
Score = 29.1 bits (62), Expect = 3.5
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 2/117 (1%)
Frame = -1
Query: 523 DSCSKWNNTQPYLGLFF*FIRDFADFGLLVKK*ADLTKI*REF*QNINAYNLPFAIQVRN 344
D C W + QP + + + FA L T EF + A PF +R
Sbjct: 278 DGCVAWLDGQPDRSVVYVSLGSFAVISL-----EQFT----EFLHGLVAAGYPFLWVLRP 328
Query: 343 CWEGRSVRASSLLRQLAKG--GCAARRLSWVTQGFPSHDVVKRRPVNCNTTHYRANW 179
G S A +L +A AR + W P DV++ R V C TH A W
Sbjct: 329 DMVGASQSAGALREAVAAAEKNNKARVVGWA----PQRDVLRHRAVGCFLTH--AGW 379
>07_03_0415 + 17920383-17921843
Length = 486
Score = 29.1 bits (62), Expect = 3.5
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 2/117 (1%)
Frame = -1
Query: 523 DSCSKWNNTQPYLGLFF*FIRDFADFGLLVKK*ADLTKI*REF*QNINAYNLPFAIQVRN 344
D C W + QP + + + FA L T EF + A PF +R
Sbjct: 278 DGCVAWLDGQPDRSVVYVSLGSFAVISL-----EQFT----EFLHGLVAAGYPFLWVLRP 328
Query: 343 CWEGRSVRASSLLRQLAKG--GCAARRLSWVTQGFPSHDVVKRRPVNCNTTHYRANW 179
G S A +L +A AR + W P DV++ R V C TH A W
Sbjct: 329 DMVGASQSAGALREAVAAAEKNNKARVVGWA----PQRDVLRHRAVGCFLTH--AGW 379
>08_02_0132 +
12908995-12909437,12909727-12910211,12910417-12910988,
12911080-12911211,12912184-12912939
Length = 795
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 265 SWVTQGFPSHDVVKRRPVNCNTTHYRANWVPGPHHQRKRHDGGSEN 128
SWV G + V+RR N YR G + R + GG+ N
Sbjct: 169 SWVILGMIARKPVRRRTYMGNNNGYRPQGGQGWNQPRPYYQGGNNN 214
>01_06_1194 -
35313132-35313154,35314462-35314604,35314751-35315444,
35315746-35315895,35316011-35316419
Length = 472
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 80 LYDWFGITFAFSWRGAVLAAAVMSFPLMVRARYPIRPIVSRITI 211
L +WFG + ++AAAV+ PL++R R S ++I
Sbjct: 154 LTEWFGQQWWTGREAVLVAAAVLLLPLVLRKRVDSLKFTSAVSI 197
>01_03_0062 - 12140514-12141851
Length = 445
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 229 VKRRPVNCNTTHYRANWVP-GPHHQRKRHDGGSENR 125
+ R P N + HY V GP+H+ K H E+R
Sbjct: 18 IYRVPANVDRKHYEPRLVSVGPYHRSKHHLSAMEDR 53
>07_03_0414 + 17892133-17893590
Length = 485
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/74 (31%), Positives = 29/74 (39%)
Frame = -1
Query: 400 EF*QNINAYNLPFAIQVRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFPSHDVVKR 221
EF + A PF +R G S A+ A G AR + W P V++
Sbjct: 302 EFLHGLVAAGYPFLWVLRPDMVGASQSAALREAVAAAGKSKARVVEWA----PQRGVLRH 357
Query: 220 RPVNCNTTHYRANW 179
R V C TH A W
Sbjct: 358 RAVGCFLTH--AGW 369
>06_01_0092 - 775290-775691
Length = 133
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -1
Query: 322 RASSLLRQLAKGGCAARR 269
RA+SLLRQL + GCAA +
Sbjct: 22 RAASLLRQLIEDGCAAAK 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,281,565
Number of Sequences: 37544
Number of extensions: 470409
Number of successful extensions: 1206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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