Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0904
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 28 7.3
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 28 7.3
U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical pr... 28 7.3
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 28 7.3
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 28 7.3
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 28 7.3
AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical ... 27 9.6
AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 443 AEIGKIPYKSKE*TEIGLSVVPFGTRVHY*RTWTPTSKGEK 565
A++ K+P K+ + EI + P + T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 443 AEIGKIPYKSKE*TEIGLSVVPFGTRVHY*RTWTPTSKGEK 565
A++ K+P K+ + EI + P + T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 443 AEIGKIPYKSKE*TEIGLSVVPFGTRVHY*RTWTPTSKGEK 565
A++ K+P K+ + EI + P + T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 443 AEIGKIPYKSKE*TEIGLSVVPFGTRVHY*RTWTPTSKGEK 565
A++ K+P K+ + EI + P + T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870
>U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical
protein F35C8.5 protein.
Length = 300
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 280 AARRLSWVTQGFPSHDVVKRRPVNC 206
A R+ W G P+HD+ RP+ C
Sbjct: 229 ALHRIFWFYSGAPAHDMHHLRPLTC 253
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 443 AEIGKIPYKSKE*TEIGLSVVPFGTRVHY*RTWTPTSKGEK 565
A++ K+P K+ + EI + P + T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 443 AEIGKIPYKSKE*TEIGLSVVPFGTRVHY*RTWTPTSKGEK 565
A++ K+P K+ + EI + P + T TP S+GEK
Sbjct: 830 ADLPKVPSKTNDDNEITTTSAPAAVTNPWGETETPLSEGEK 870
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 283 IPLSPAGVIAKRPAPIALPNS-CAP 354
IP++PA V+A R P ALP S C P
Sbjct: 145 IPVAPAPVVAGRLIPQALPGSPCEP 169
>AL117201-2|CAI79268.1| 527|Caenorhabditis elegans Hypothetical
protein Y53H1C.1b protein.
Length = 527
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 89 WFGITFAFSWRGAVLAAAVMSFP--LMVRARYPIRPIVSRITIHW--PSFYNVVTGKTLG 256
W GI F+F W G +MSFP V+A+ + IV+ ++ W S Y+V+ + LG
Sbjct: 95 WEGIAFSFMWVG-----VIMSFPASAAVQAQTFGQYIVAGLSPIWHLGSPYDVILERGLG 149
Query: 257 Y 259
+
Sbjct: 150 F 150
>AL117201-1|CAB55063.1| 541|Caenorhabditis elegans Hypothetical
protein Y53H1C.1a protein.
Length = 541
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 89 WFGITFAFSWRGAVLAAAVMSFP--LMVRARYPIRPIVSRITIHW--PSFYNVVTGKTLG 256
W GI F+F W G +MSFP V+A+ + IV+ ++ W S Y+V+ + LG
Sbjct: 95 WEGIAFSFMWVG-----VIMSFPASAAVQAQTFGQYIVAGLSPIWHLGSPYDVILERGLG 149
Query: 257 Y 259
+
Sbjct: 150 F 150
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,856
Number of Sequences: 27780
Number of extensions: 366731
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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