Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0904
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.1  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      23   2.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   8.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   8.4  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/48 (25%), Positives = 16/48 (33%)
 Frame = -1

Query: 250 GFPSHDVVKRRPVNCNTTHYRANWVPGPHHQRKRHDGGSENRAAPAKG 107
           GFP  ++            Y   WVP  +  R + DG       P  G
Sbjct: 109 GFPGEEMWNPNTNISEDCLYLNIWVPQKYRLRHKGDGSPGGNGGPRNG 156


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 517 CSKWNNTQPYLGLFF*FIRDFADF 446
           C +WNN Q  +   F  +RD  DF
Sbjct: 8   CLRWNNYQSSITSAFENLRDDEDF 31


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/48 (25%), Positives = 16/48 (33%)
 Frame = -1

Query: 250 GFPSHDVVKRRPVNCNTTHYRANWVPGPHHQRKRHDGGSENRAAPAKG 107
           GFP  ++            Y   WVP  +  R + DG       P  G
Sbjct: 109 GFPGEEMWNPNTNISEDCLYLNIWVPQKYRLRHKGDGSPGGNGGPRNG 156


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 517 CSKWNNTQPYLGLFF*FIRDFADF 446
           C +WNN Q  +   F  +RD  DF
Sbjct: 8   CLRWNNYQSSITSAFENLRDDEDF 31


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 184 NWVPGPHHQRKRHDGGSENRA 122
           NWVPG H Q +      E +A
Sbjct: 341 NWVPGNHDQLRLVSRFGEEKA 361


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 184 NWVPGPHHQRKRHDGGSENRA 122
           NWVPG H Q +      E +A
Sbjct: 341 NWVPGNHDQLRLVSRFGEEKA 361


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 241 SHDVVKRRPVNCNTTHYRANWVPGP 167
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 271 ALQHIPLSPAGVIAKRPAPIALPNSC 348
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 271 ALQHIPLSPAGVIAKRPAPIALPNSC 348
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,810
Number of Sequences: 438
Number of extensions: 4944
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)