Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0904
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45207.2 68414.m05186 remorin family protein Since this genom...    34   0.078
At5g37010.1 68418.m04438 expressed protein                             29   2.9  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   6.8  
At2g37100.1 68415.m04552 protamine P1 family protein contains Pf...    28   6.8  
At3g56130.1 68416.m06238 biotin/lipoyl attachment domain-contain...    27   8.9  

>At1g45207.2 68414.m05186 remorin family protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 555

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = -1

Query: 391 QNINAYNLPFAIQVRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTQGFPSHDVVKRRPV 212
           QN+++    F++ +R C E RS R+ +L ++L      +  LS VT   P    VKR  V
Sbjct: 118 QNLDSARSSFSVALRECQERRS-RSEALAKKLDYQRTVSLDLSNVTSTSPRVVNVKRASV 176

Query: 211 NCNTTHYRANWVPG-PHHQRKRHDGGSENRAAPAKGEGNTKP 89
           + N +    +  PG P +      G S  R  P +  G   P
Sbjct: 177 STNKSSVFPS--PGTPTYLHSMQKGWSSER-VPLRSNGGRSP 215


>At5g37010.1 68418.m04438 expressed protein
          Length = 637

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 225 NDGQ*IVIRLTIGR-IGYRARTISGNDMTAAARTAPRQLKAKVIPNQSYRRSPINPRRP 52
           N+G   V R+T+ R +G  A   S +   AA++ +P +L  K   +  YRR+P++   P
Sbjct: 257 NNGDGSVKRITVKRNVGKAASPRSQSPARAASQPSPSKLSRKT-EHSPYRRNPLSEIDP 314


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 542 TPTSKGEKPSIRAMAHYVNHHP 607
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At2g37100.1 68415.m04552 protamine P1 family protein contains Pfam
           PF00260: Protamine P1
          Length = 297

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
 Frame = -1

Query: 277 ARRLSWVTQGFPSHDVVKRRPVNCNTTHYRANWVPGPH--HQRKRHDGGSENRAAPAKGE 104
           +RR  WV   FP H         C +  +R  W    H    +K     S +R+ P  G 
Sbjct: 94  SRRCGWVKNAFPCHSFTGIIKPTCFSPVWR-KWKSFSHASFSKKSEKRSSSSRSEPIFGR 152

Query: 103 GNTKP 89
              +P
Sbjct: 153 STVEP 157


>At3g56130.1 68416.m06238 biotin/lipoyl attachment domain-containing
           protein low similarity to SP|Q06881 Biotin carboxyl
           carrier protein of acetyl-CoA carboxylase (BCCP)
           {Anabaena sp.}; contains Pfam profile PF00364:
           Biotin-requiring enzyme
          Length = 281

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 340 NSCAPEWRMANCKR*YFVKIRVK 408
           NSC P WR++N    Y + +R K
Sbjct: 36  NSCVPRWRLSNRNSNYRLVLRAK 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,506
Number of Sequences: 28952
Number of extensions: 345628
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)