Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0903
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    98   6e-22
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    97   1e-21
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    25   4.8  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   6.4  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    24   8.5  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    24   8.5  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    24   8.5  

>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 97.9 bits (233), Expect = 6e-22
 Identities = 47/82 (57%), Positives = 59/82 (71%)
 Frame = +1

Query: 10  IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 189
           +PNLQVIKA QSL SRGY+K ++ W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR
Sbjct: 37  VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVR 96

Query: 190 TETVRRGPVGRPDAPARSAEDS 255
               R    GRP+   R++ D+
Sbjct: 97  PTAPR---AGRPEPRERASADA 115


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 96.7 bits (230), Expect = 1e-21
 Identities = 47/79 (59%), Positives = 57/79 (72%)
 Frame = +1

Query: 10  IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 189
           +PNLQVIKA QSL SRGY+K ++ W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR
Sbjct: 37  VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVR 96

Query: 190 TETVRRGPVGRPDAPARSA 246
               R    GRP+   RS+
Sbjct: 97  PAAPR---AGRPEPRERSS 112



 Score = 24.2 bits (50), Expect = 8.5
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 264 RRTPAAPGVAPHDKKAD-VGPGSADLEFKGGYGR 362
           R + A  G    +KK D   PG     F+GG+GR
Sbjct: 110 RSSAADAGYRRAEKKDDGAAPGGFAPSFRGGFGR 143


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 179 RLSVAGTISGGRCKNILKY 123
           R+   G+++GG CK  LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 287 TRGSRSTSVCRLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGGRCKNILK 126
           + GS   S   +S       S R T  R   S+RT       T+SG R  +IL+
Sbjct: 290 SNGSPEDSPLLVSPNHFLQRSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSILQ 343


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 118 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGR 222
           IEYL    + PP + P  L   +  E +  G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 330 LSLDQHQPFYHEVQHQGQQEY 268
           L ++QH  ++HE Q++ + EY
Sbjct: 164 LDIEQHLQYFHEWQNKPRVEY 184


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 149 LLKLCLQHLSAQYVQRQY 202
           LLK+CL  +SA Y+   Y
Sbjct: 123 LLKVCLDEMSASYIDYGY 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,703
Number of Sequences: 5004
Number of extensions: 25956
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)