Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0903
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 102 1e-22
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 102 1e-22
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 100 4e-22
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 0.67
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 30 0.88
12_02_1222 + 27145264-27148287 29 1.2
01_06_0202 + 27483503-27483543,27484567-27485311 29 1.2
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 29 2.0
03_05_0264 - 22510997-22511012,22511641-22511709,22511783-225119... 29 2.0
01_01_0743 - 5763654-5766902 29 2.0
02_05_0012 - 24959542-24959684,24960132-24960192,24960995-249611... 28 2.7
07_01_0275 - 2023651-2023755,2025324-2025452,2025555-2025625,202... 28 3.6
03_05_0528 - 25268396-25269217 28 3.6
05_04_0174 - 18728199-18731411 27 4.7
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 27 6.2
09_03_0062 - 11969719-11970036,11970115-11970843 27 6.2
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 27 6.2
05_03_0482 - 14568108-14568284,14568912-14569970,14570532-145712... 27 8.2
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 102 bits (244), Expect = 1e-22
Identities = 49/85 (57%), Positives = 62/85 (72%), Gaps = 3/85 (3%)
Frame = +1
Query: 7 EIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV 186
++PNLQVIK MQS KS+ YV+E F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S
Sbjct: 36 DVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSA 95
Query: 187 RT--ETVRRGPVG-RPDAPARSAED 252
R GP G RP P R D
Sbjct: 96 RPPGRPFGSGPPGDRPRGPPRFEGD 120
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 102 bits (244), Expect = 1e-22
Identities = 49/85 (57%), Positives = 62/85 (72%), Gaps = 3/85 (3%)
Frame = +1
Query: 7 EIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV 186
++PNLQVIK MQS KS+ YV+E F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S
Sbjct: 36 DVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSA 95
Query: 187 RT--ETVRRGPVG-RPDAPARSAED 252
R GP G RP P R D
Sbjct: 96 RPPGRPFGSGPPGDRPRGPPRFEGD 120
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 100 bits (240), Expect = 4e-22
Identities = 46/85 (54%), Positives = 62/85 (72%), Gaps = 3/85 (3%)
Frame = +1
Query: 7 EIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV 186
++PNL+VIK MQS KS+ YV+E F+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S
Sbjct: 36 DVPNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSA 95
Query: 187 R--TETVRRGPVG-RPDAPARSAED 252
+ + GP G RP P R D
Sbjct: 96 KPPSRPFGSGPPGDRPRGPPRFEGD 120
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 30.3 bits (65), Expect = 0.67
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = +1
Query: 28 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 198
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 199 VRRGP-----VGRPDAPARSAED 252
R+ + +P PA S +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>03_05_0432 - 24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 29.9 bits (64), Expect = 0.88
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 293 CNTRGSRSTSVCRLSSAERAGASGRPTG 210
CN SR+ S+C +S E A SG P G
Sbjct: 939 CNKELSRTISICNSTSTENAIGSGYPVG 966
>12_02_1222 + 27145264-27148287
Length = 1007
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 278 SRSTSVCRLSSAERAGASGRPTGPRRTVSVRTERL-SVAGTISGGRCKNILK 126
+R+ + S+A A P+ RRT SVR S GT+S R N++K
Sbjct: 714 TRAAAAAARSTAASAAMLRSPSAARRTASVRCREFDSEVGTLSSIRHVNVVK 765
>01_06_0202 + 27483503-27483543,27484567-27485311
Length = 261
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 296 RCNTR-GSRSTSVCRLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGG 147
R TR G RS+ ++ ER+G+ GR G RR V G +GG
Sbjct: 188 RVGTRKGGRSSGATTVAGHERSGSGGRGRGRRRVVRCTAGGGVTTGDEAGG 238
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 28.7 bits (61), Expect = 2.0
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 264 RRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 371
R TP P + PH K+A P S L G G P
Sbjct: 9 RLTPPTPAMHPHRKRARSPPASGSLVRCSSSGNGAP 44
>03_05_0264 -
22510997-22511012,22511641-22511709,22511783-22511931,
22512235-22512330,22512853-22512981,22513216-22513494,
22513983-22514069
Length = 274
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = -3
Query: 302 IMRCNTRGSRSTSVCRLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGGRC 141
I +C G CR R GA PRR VSV GG C
Sbjct: 34 IPQCRVEGGGCRRGCRRGGPRRGGAPAHLRAPRRPVSVGCLSHVTPPASGGGGC 87
>01_01_0743 - 5763654-5766902
Length = 1082
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 299 MRCNTRGSRSTSVCRLSSAERAGASGRPTGPRRTVSVRTERLSVAGTI 156
+RC+ + S + +SA R + R PR V V+ ERL AG +
Sbjct: 31 VRCDVLAA-SGHILEAASAPRGAKNSRSRAPRTDVDVQIERLCRAGEL 77
>02_05_0012 -
24959542-24959684,24960132-24960192,24960995-24961117,
24961196-24961262,24961510-24961580,24961650-24961747,
24962279-24962355,24963568-24963635,24963754-24963855,
24963945-24963976,24964066-24964112,24964263-24964316,
24964952-24965034
Length = 341
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 330 LSLDQHQPFYHEVQHQGQQEYV---CMQTVLSRAGWGIRTTNRATAYCLC 190
L+ ++H P Y E+ +G EY+ Q + A W ++T AT+Y C
Sbjct: 38 LAEEKHLPMYDELASKGNVEYIAGGATQNSIRVAQWMLQTPG-ATSYMGC 86
>07_01_0275 -
2023651-2023755,2025324-2025452,2025555-2025625,
2025717-2025803,2026000-2026494,2026588-2026813
Length = 370
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 215 LVVLMPQPALLRTVCIQTYSCCPWCC 292
LV+ ALL + +CC WCC
Sbjct: 30 LVIAAVAAALLLVLLFAACACCSWCC 55
>03_05_0528 - 25268396-25269217
Length = 273
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 321 PGSADLEFKGGYGRG 365
PGS +LE GGYG G
Sbjct: 106 PGSTELEINGGYGEG 120
>05_04_0174 - 18728199-18731411
Length = 1070
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 359 SIASLKFKIS*AWTNISLFIMRCNTRGSRSTSVCRLSSAERAGASGRPTGPRRTVSVRTE 180
+I +K+ + + + + R V R S+ +RAG SGR TGP + TE
Sbjct: 690 TIDGIKYVVDPGFCKVKSYNPRTGMESLLVAPVSRASAEQRAGRSGR-TGPGECFRLYTE 748
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 198 CLCTY*ALKCCRHNFRRKVQEYSQVFNTLIG 106
CL Y +LK R+ ++ QE++ +F+ L G
Sbjct: 804 CLPAYPSLKVTRNQLQKITQEHASIFHILSG 834
>09_03_0062 - 11969719-11970036,11970115-11970843
Length = 348
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 121 QYPHWLGTSKSASRQ 77
Q+PHWLGT+ AS++
Sbjct: 172 QHPHWLGTAGYASKE 186
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 165 RHNFRRKVQEYSQVFNTLIG*VPVKVPPGKLFFDITSGLE 46
R+NFR KV+E S F + +G PP K+ D+ G++
Sbjct: 314 RNNFRAKVKEDSATFPSSLGMGRALSPP-KMSVDLEMGMK 352
>05_03_0482 -
14568108-14568284,14568912-14569970,14570532-14571236,
14571376-14571656,14571748-14571769
Length = 747
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 290 NTRGSRSTSVCRLSSAERAGASGRPTGPRRTVSVR 186
NT+GS S S +SA AGA+ R P +++
Sbjct: 25 NTKGSSSASAAAAASASVAGAAVRHRAPFLAAAIK 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,251,451
Number of Sequences: 37544
Number of extensions: 190285
Number of successful extensions: 690
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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