Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0903
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                111   2e-25
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     30   0.69 
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)                      29   1.2  
SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      27   4.8  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             27   6.4  
SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)                 27   8.5  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score =  111 bits (268), Expect = 2e-25
 Identities = 54/81 (66%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
 Frame = +1

Query: 10  IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV- 186
           +PNL VIKA+QSLKSRGYV+E+F W+H+YW LTNEGI YLR FLHLP EIVPATL+R V 
Sbjct: 38  VPNLHVIKALQSLKSRGYVEEKFCWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVT 97

Query: 187 RTETVRRGPVGRPDAPARSAE 249
           R ET R  P G  D P    E
Sbjct: 98  RAETARPRPKGM-DGPRGPGE 117


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 267 RTPAAPGVAPHDK-KADVGPGS 329
           +TPA PG+AP D  K  VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386


>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
          Length = 585

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 276 AAPGVAPHDKKADVGP 323
           A PG+APHDKK+  GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560


>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 194 RQYAVALLVVLMPQPALLRTVCIQTYSC 277
           RQ AV  ++V +   A   TVC   Y C
Sbjct: 23  RQLAVGCIIVFLVSNAAAETVCYDVYGC 50


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = +1

Query: 10  IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 189
           I  +  ++ +  + SRG+VK+ +A+    W   +  + +L  +L L P+I   +  R++R
Sbjct: 129 ITAIYTLEMICKIISRGFVKDSYAYLRDTWNWLDSLVVFLS-YLSLAPDIASLSGIRTLR 187


>SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 276 AAPGVAPHDKKADVGP 323
           A  G+APHDKKA  GP
Sbjct: 377 ARHGLAPHDKKAGRGP 392


>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
          Length = 769

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -3

Query: 293 CNTRGSRSTSVCRLSSAERAGASG-RPT--GPRRTVSVRTE 180
           C+TRGSR TS    S  +  G++G RPT   PR++ +   E
Sbjct: 673 CSTRGSRDTS-RDTSCKDTTGSAGTRPTRQSPRKSAAKNNE 712


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -3

Query: 293  CNTRGSRSTSVCRLSSAERAGASG-RPT--GPRRTVSVRTE 180
            C+TRGSR TS    S  +  G++G RPT   PR++ +   E
Sbjct: 1340 CSTRGSRDTS-RDTSCKDTTGSAGTRPTRQSPRKSAAKNNE 1379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,703
Number of Sequences: 59808
Number of extensions: 206814
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)