Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0903
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...    87   4e-18
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    29   1.8  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z83120-5|CAB05588.1| 1467|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   7.3  
U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    26   9.7  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    26   9.7  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score = 87.4 bits (207), Expect = 4e-18
 Identities = 42/71 (59%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
 Frame = +1

Query: 10  IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLK---R 180
           + NL+VIK ++SL SR  VKEQFAWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R
Sbjct: 38  VSNLEVIKTLKSLASRELVKEQFAWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPR 97

Query: 181 SVRTETVRRGP 213
            +R     R P
Sbjct: 98  EIRVPHEDRAP 108


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
            isoform a protein.
          Length = 1702

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 342  IQDQLSLDQHQPFYHEVQHQGQQE 271
            +Q+Q +  Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 287 TRGSRSTSVCRLSSAERAGASGRPTGPRRTVS 192
           T G ++T+VCR      +  S  PT P  TV+
Sbjct: 120 TYGDKATAVCRRQQTFASTVSAAPTNPPTTVT 151


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 287 TRGSRSTSVCRLSSAERAGASGRPTGPRRTVS 192
           T G ++T+VCR      +  S  PT P  TV+
Sbjct: 133 TYGDKATAVCRRQQTFASTVSAAPTNPPTTVT 164


>Z83120-5|CAB05588.1| 1467|Caenorhabditis elegans Hypothetical protein
            R06A4.8 protein.
          Length = 1467

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 284  RGSRSTSVCRLSSAERAGASGRPTGPRRTVSVRTERLS 171
            R +  T + ++ S+ERAG  G P  PR   +V  + L+
Sbjct: 1197 RWNCGTWMDKMGSSERAGNKGEPATPRDGAAVELQGLA 1234


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 13  PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 183
           P +QV+  +  +    ++ E      F W+ T+  I  + +F+  PP  +I+   LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311


>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 324 LDQHQP-FYHEVQHQGQQEYVCMQTVLSRAGWG 229
           +  HQP  +H+ QHQ QQ  +    ++ + G G
Sbjct: 490 MQMHQPPMWHQQQHQQQQRMMPQDHMMMQGGGG 522


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 324 LDQHQP-FYHEVQHQGQQEYVCMQTVLSRAGWG 229
           +  HQP  +H+ QHQ QQ  +    ++ + G G
Sbjct: 487 MQMHQPPMWHQQQHQQQQRMMPQDHMMMQGGGG 519


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,417,170
Number of Sequences: 27780
Number of extensions: 157889
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)