Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0903
         (424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   100   4e-22
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   100   8e-22
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...    98   2e-21
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1...    29   0.98 
At1g16370.1 68414.m01958 transporter-related low similarity to o...    26   9.1  

>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  100 bits (240), Expect = 4e-22
 Identities = 48/84 (57%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
 Frame = +1

Query: 7   EIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV 186
           ++PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S 
Sbjct: 36  DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA 95

Query: 187 RT-ETVRRGPVG-RPDAPARSAED 252
           +       GP G R   P RS  D
Sbjct: 96  KPGGRPFGGPPGDRQRGPPRSDGD 119


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score = 99.5 bits (237), Expect = 8e-22
 Identities = 40/61 (65%), Positives = 53/61 (86%)
 Frame = +1

Query: 7   EIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV 186
           ++PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S 
Sbjct: 36  DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA 95

Query: 187 R 189
           +
Sbjct: 96  K 96


>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score = 97.9 bits (233), Expect = 2e-21
 Identities = 44/72 (61%), Positives = 57/72 (79%)
 Frame = +1

Query: 10  IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 189
           +PNLQVIK MQS KS+ YV+E FAW H+YW+LTNEGI++LR +L+LP EIVPATLK+   
Sbjct: 38  VPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKK--- 94

Query: 190 TETVRRGPVGRP 225
               ++ P+GRP
Sbjct: 95  ----QQKPLGRP 102


>At4g16680.1 68417.m02519 RNA helicase, putative similar to
           SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
           HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 883

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 359 SIASLKFKIS*AWTNISLFIMRCNTRGSRSTSVCRLSSAERAGASGRPTGP 207
           +I  +K+ I   +  I+ +  R        T + + S+A+RAG SGR TGP
Sbjct: 504 TIDGVKYVIDPGYCKINSYNPRTGMESLLVTPISKASAAQRAGRSGR-TGP 553


>At1g16370.1 68414.m01958 transporter-related low similarity to
           organic cation transporter OCTN1 from [Homo sapiens]
           GI:2605501, [Mus musculus] GI:4126605, [Rattus
           norvegicus] GI:5679326; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 521

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 10  IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHL 147
           IP    +    SL    ++ +  +WR+ Y Y +   + Y  IFL+L
Sbjct: 215 IPFTLFVLGFMSLSGIAFLAQDSSWRYLYLYTSVPAVFYC-IFLYL 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,866,777
Number of Sequences: 28952
Number of extensions: 140073
Number of successful extensions: 453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)