Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0902
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    26   0.24 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.2  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    23   2.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.9  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   5.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.0  

>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 69  LVSIIRSKG--YKHPGGIRYPGGITYYPRFPDYKDPEITPSKLFRVERIKSSKHFPYWQK 242
           LVS +R KG  ++    I  P     YP   +  D   TP +LF  ER +  K++P ++ 
Sbjct: 16  LVSSLRKKGRFWECLAPIPQPPA---YPIIGNLFDIMRTPEQLFLAERERGLKYYPIYKL 72

Query: 243 RILDN 257
            +  N
Sbjct: 73  DVCGN 77


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
 Frame = -3

Query: 436  CNQ-ALTIFFKDCVVYIICSWFSIRKFN------WCNFNQMLDFP 323
            C++ A   +  DC  Y+ C W     FN      W N   + D+P
Sbjct: 1279 CSENAFAAYPGDCTRYLHCLWGKYEVFNCAPGLHWDNNKNICDWP 1323


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 69  LVSIIRSKG--YKHPGGIRYPGGITYYPRFPDYKDPEITPSKLFRVERIKSSKHFPYWQ 239
           LVS +R KG  ++    I  P     YP   +  D   TP ++F  +R +  K++P ++
Sbjct: 16  LVSSLRKKGRFWECLAPIPQPPA---YPIIGNLFDIMRTPEQMFLADRERGLKYYPIYK 71


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 509 DSSFFYHYQILLGPG 465
           D    YH Q+LL PG
Sbjct: 113 DQQHLYHPQVLLSPG 127


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 216 SKHFPYWQKR 245
           SKH+ YWQ +
Sbjct: 18  SKHYSYWQSK 27


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 410 KENGQCLVTKK 442
           K NG+C++ KK
Sbjct: 43  KNNGECVINKK 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,745
Number of Sequences: 336
Number of extensions: 4095
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)