Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0902
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   5.5  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    26   5.5  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   5.5  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   7.3  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   7.3  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.7  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 488  SDRKKMNLQP*KEILDIDGIQDMEGD 565
            S R++ +L P  E  D+D + DMEGD
Sbjct: 978  SVRERRDLAPMLEEPDMDDLDDMEGD 1003


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 291 TTVTLVSS*IFNYPISFFASMENVCLI*F 205
           +T+TL S+ +F Y   +FA ++ V LI F
Sbjct: 70  STITLQSNLLFTYYKHYFAGIKKVALIGF 98


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 156 DYKDPEITPSKLFRVERIKSSKHFPYWQKRILDN 257
           D +   I  +K+ R  RI S+ H PY  K+ +DN
Sbjct: 147 DGRHIRIERAKVNRTIRISSAPHQPYITKKDIDN 180


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
 Frame = +3

Query: 270 RRPESLWLKIYQKSMLNYGKSSI*--LKLHQLNFLMENQLQMI*TTQSLKKMVNAWLQKN 443
           ++ ESL L++   + L    + +   LK H+   ++ N L+ +   Q+ +   + +L++ 
Sbjct: 81  KKIESLSLQVRPPTTLELSFTDVDMFLKYHREKNVL-NSLEAL--VQNTQIAFDQYLEEE 137

Query: 444 WNRNSARSRP*KNLIVIEKR 503
           W   +A+SRP  + I++E +
Sbjct: 138 WRSKAAKSRPSFDNILLENK 157


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 317 KLWKIKHLIKITPIEFPYGEPT 382
           K+W +++L  + PI FP G PT
Sbjct: 239 KVWDLRNLSSLVPIPFPAG-PT 259


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
 Frame = -2

Query: 560 PPYPVFHLCLVSLFMVVDS----SFFY 492
           P  P FH+CL+ +F+++ S    SFF+
Sbjct: 17  PLIPSFHVCLLIMFLILYSQEILSFFF 43


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 305  EINAKLWKIKHLIKITPIEFPYGEPTADDINYTILKENGQC 427
            E +++L ++  LIK+ P++  Y + ++D+ N  +    G C
Sbjct: 1837 EDDSELERLSKLIKVPPLQELYSQMSSDENNQILELIAGWC 1877


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,602
Number of Sequences: 5004
Number of extensions: 66515
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)