Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0902
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0279 - 15249361-15249612,15251270-15251506,15252704-152527...    32   0.47 
05_04_0202 - 19010953-19013355                                         31   1.1  
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365...    29   2.5  
04_04_0437 + 25193263-25194627                                         29   3.3  

>08_02_0279 -
           15249361-15249612,15251270-15251506,15252704-15252772,
           15252845-15252895,15254009-15254056,15254187-15254267,
           15256219-15256257,15256486-15256551,15258113-15258236,
           15258576-15258696,15258771-15258900,15259692-15259853
          Length = 459

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 120 YPGGITYYPRFPDYKDPEITPSKLFRVERIKSSKHFPYWQ-KRILDN*KFMRRPE 281
           Y   + ++PRFPD K   + P +L R   +K   H   W  KR+ +    MR PE
Sbjct: 334 YVRSVAFHPRFPDNKLSAVPPLRLKRERELKRRPHQNGWLFKRVPE----MRDPE 384


>05_04_0202 - 19010953-19013355
          Length = 800

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 278 WSPHEFSIIQYPFLPVWKMFA*FNSLYS 195
           WSP + S +Q+PF P WK +A  N+ +S
Sbjct: 497 WSPLDISNVQFPF-PHWKRWAEVNTRFS 523


>03_05_0432 -
           24231984-24233048,24233391-24235160,24235261-24236582,
           24236668-24237013
          Length = 1500

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/97 (21%), Positives = 47/97 (48%)
 Frame = +2

Query: 269 EETRVTVVKNIPEINAKLWKIKHLIKITPIEFPYGEPTADDINYTILKENGQCLVTKKLE 448
           +E  V + K   E+N +L K+KH++K    E    +   + +N +  +E+ +C     ++
Sbjct: 215 DERSVLLEKANQEMNLELNKLKHMLKQKHEELNEKQAELEKLNISTEEEHLKC-----MQ 269

Query: 449 PEFGQIQALEEFDSDRKKMNLQP*KEILDIDGIQDME 559
            E  Q+   ++    + KM L   ++ +++   +D E
Sbjct: 270 AEMAQLSLEKQLILAQDKMRLLALEKQIEVSKAKDTE 306


>04_04_0437 + 25193263-25194627
          Length = 454

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -3

Query: 280 SGLLMNFQLSNILFCQYGKCLLDLIRSTLNNFD 182
           SG L N  LSN  F   G C  DLI+    N D
Sbjct: 354 SGRLRNLTLSNNYFTSLGSCCWDLIKEGKLNVD 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,523,072
Number of Sequences: 37544
Number of extensions: 370175
Number of successful extensions: 749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)