Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0902
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 29   4.4  
SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)                  28   7.7  

>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 338 LIKITPIEFPYGEPTADDINYTILKENGQCLVTKKLEPEFGQIQALEEFDSDRKKM 505
           LI +   +    +PTA +I    +KE  Q  + KKL+P     +  E++DS   K+
Sbjct: 333 LINLADDDMTKYKPTAAEITSENVKEFVQAFLDKKLKPHLLSAEIPEDWDSKPVKV 388


>SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)
          Length = 444

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 90  KGYKHPGGIRYPGGITYYPRFPDYKDPEITPSKLFRVERIK 212
           KG +  GG++ PG +   P  P  K P +  S L+   R +
Sbjct: 233 KGKEVKGGLKMPGKVAANPLPPSTKQPGLAQSLLYSGSRFQ 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,264,935
Number of Sequences: 59808
Number of extensions: 434755
Number of successful extensions: 817
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)