Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0902
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical ...    61   8e-10
Z81123-5|CAB76411.2|  393|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z50071-9|CAA90404.3|  393|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical pr...    30   1.7  

>AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical
           protein W04B5.4 protein.
          Length = 197

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
 Frame = +2

Query: 278 RVTVVKNIPEINAKLWKIKHLIKITPIEFPYG-EPTADDINYTILKENGQCLV 433
           R+ V +N   IN +LWKIKHLI++ P+EF  G EPT DDI  T L  NGQC V
Sbjct: 91  RMEVFRNTELINTELWKIKHLIELRPVEFKNGVEPTEDDIFSTSLAPNGQCEV 143


>Z81123-5|CAB76411.2|  393|Caenorhabditis elegans Hypothetical
           protein T07D4.1 protein.
          Length = 393

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 357 IGVILIKCLIFHSLALISGIFLTTVTLVSS*IFNYPISFFAS 232
           I V++I CL+F  +  +SG FLT + + S  +   P +FF S
Sbjct: 35  IPVMIIYCLVF--VVCLSGNFLTLIVMTSHPMMRTPTNFFLS 74


>Z50071-9|CAA90404.3|  393|Caenorhabditis elegans Hypothetical
           protein T07D4.1 protein.
          Length = 393

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 357 IGVILIKCLIFHSLALISGIFLTTVTLVSS*IFNYPISFFAS 232
           I V++I CL+F  +  +SG FLT + + S  +   P +FF S
Sbjct: 35  IPVMIIYCLVF--VVCLSGNFLTLIVMTSHPMMRTPTNFFLS 74


>Z29443-8|CAE45742.1|  455|Caenorhabditis elegans Hypothetical
           protein T07C4.9b protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 93  GYKHPGGIRYPGGITYYPRFPDY 161
           GY   GG  YPGG   YP+ P Y
Sbjct: 62  GYPGQGGAPYPGGSGGYPQAPQY 84


>Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.9a protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 93  GYKHPGGIRYPGGITYYPRFPDY 161
           GY   GG  YPGG   YP+ P Y
Sbjct: 104 GYPGQGGAPYPGGSGGYPQAPQY 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,931,075
Number of Sequences: 27780
Number of extensions: 365212
Number of successful extensions: 993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)