Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0902
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   3.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   3.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   7.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.9  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 578 NLI*NPPPYPVFHLCLVSLFMVVDSSFFYHYQILLG 471
           NL+ N P    +  CL+  F +VD        I+LG
Sbjct: 63  NLV-NEPSITCYMYCLLEAFSLVDDEANVDEDIMLG 97


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 578 NLI*NPPPYPVFHLCLVSLFMVVDSSFFYHYQILLG 471
           NL+ N P    +  CL+  F +VD        I+LG
Sbjct: 63  NLV-NEPSITCYMYCLLEAFSLVDDEANVDEDIMLG 97


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 653 FSSIIEYKVN*NHFIQF*YYIFEHTNLI*NPPPYPVF 543
           +S+   Y  N N++ +  YY   +   I  P P PV+
Sbjct: 91  YSNYNNYNNNYNNYNKKLYYNINYIEQIPVPVPVPVY 127


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 624 LKPFYPILILHI 589
           ++PF P+L+LH+
Sbjct: 880 VRPFAPLLLLHL 891


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,378
Number of Sequences: 438
Number of extensions: 5240
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)