Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0902
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 / am...    28   6.3  
At4g29870.1 68417.m04251 expressed protein predicted protein, Ar...    27   8.4  

>At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 /
           aminophospholipid flippase 1 / magnesium-ATPase 1 (ALA1)
           nearly identical to SP|P98204 Phospholipid-transporting
           ATPase 1 (EC 3.6.3.1) (Aminophospholipid flippase 1)
           {Arabidopsis thaliana}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1158

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 404 ILKENGQCLVTKKLEPEFGQIQALEEFDSDRKKMNL 511
           I + +G  ++  + E +   +  L EFDSDRK+M++
Sbjct: 581 IERTSGHIVINVRGETQRFNVLGLHEFDSDRKRMSV 616


>At4g29870.1 68417.m04251 expressed protein predicted protein,
           Arabidopsis thaliana, PIR2:T01282
          Length = 172

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -2

Query: 563 PPPYPVFHLCLVSLFMVVDSSFFYHYQILLGPGSGRIPVPI 441
           P P  VF L L++ F+VV S F Y   I+  PG G    PI
Sbjct: 51  PSPMTVFSLILLTYFLVV-SGFVYDV-IVEPPGIGSTQDPI 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,898,835
Number of Sequences: 28952
Number of extensions: 329421
Number of successful extensions: 748
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)