Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0901
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       54   8e-08
07_03_1662 + 28447419-28447666,28448429-28448573                       49   2e-06
09_02_0195 + 5643549-5645090                                           31   0.80 
09_04_0430 + 17502387-17503505                                         28   5.6  
08_02_1012 + 23550314-23551504                                         28   5.6  
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473...    27   9.9  
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526...    27   9.9  

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 29/59 (49%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +3

Query: 264 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNI 434
           V V+RDKTKV +T+D PFS                  DWLRV+AS  D   YELRYFNI
Sbjct: 64  VTVSRDKTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNI 122



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
 Frame = +1

Query: 139 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNL--AITLS 270
           ++ F IDC  P +D I+++ + EK+L+E +KV  GK  NL  ++T+S
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVS 67


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 27/59 (45%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 264 VVVARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNI 434
           V V RDKTKV +T+D  FS                  DWLRV+A+  D   YELRYFNI
Sbjct: 63  VTVTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNI 121



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +1

Query: 139 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNL 255
           ++ F IDC+ P ED I+++ + EK+L+E +KV  GK  NL
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNL 59


>09_02_0195 + 5643549-5645090
          Length = 513

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 110 ILPPFTPFLPVFWCNWAFLAT 48
           ILPP  P LP+ W +W  LAT
Sbjct: 152 ILPPSNPTLPMQWIDWEALAT 172


>09_04_0430 + 17502387-17503505
          Length = 372

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 104 PPFTPFLPVFWCNWAFLATGF 42
           PP  P   +++C W F   GF
Sbjct: 270 PPIVPGTDMYYCTWGFFPVGF 290


>08_02_1012 + 23550314-23551504
          Length = 396

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 104 PPFTPFLPVFWCNWAFLATGF 42
           PP  P   +++C+W F   GF
Sbjct: 264 PPIVPGTDMYYCSWGFFPMGF 284


>06_03_0576 -
           22443668-22444146,22446239-22446393,22447251-22447331,
           22448475-22448618,22449670-22449695,22449748-22449811,
           22449905-22449996,22450550-22450780,22451238-22451678,
           22451754-22452293
          Length = 750

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 311 NVCGDSDFRLIPGDDNVIARLFVLPSTLTCSFKYFS 204
           N   D D RL+  DD V +   VLP    CS   F+
Sbjct: 666 NAARDCDLRLLRSDDYVASLPAVLPELWICSLCRFN 701


>02_05_0389 +
           28551649-28551903,28552328-28552402,28552482-28552605,
           28552692-28552978,28553147-28553482,28553813-28553869,
           28554156-28554382,28554465-28554627,28554912-28554938
          Length = 516

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 299 DSDFRLIPGDDNVIARLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQS 156
           D D  L  GD+  IAR  ++ ST+     Y  K      L S  C++S
Sbjct: 204 DPDKTLKIGDERAIARRILVESTIPLMQSYSEKRSHKIFLESLLCMES 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,944,638
Number of Sequences: 37544
Number of extensions: 212883
Number of successful extensions: 588
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)