Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0901
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)         38   0.007
SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05)        31   0.82 
SB_36463| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +3

Query: 375 DWLRVVASAHDAYELRYFNI 434
           DWLRVVA+ H +YELRYF I
Sbjct: 18  DWLRVVAADHTSYELRYFQI 37


>SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)
          Length = 50

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +3

Query: 375 DWLRVVASAHDAYELRYFNI 434
           DWLRVVA+ H +YELRYF I
Sbjct: 18  DWLRVVAADHTSYELRYFQI 37


>SB_19339| Best HMM Match : Transposase_21 (HMM E-Value=5.6e-05)
          Length = 290

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 157 DCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLAITLSSPGI 282
           +C    ED I+D  N++ + KEHV +    NN AI L++ G+
Sbjct: 84  NCPENIED-IIDGENYQLFFKEHVFLR-NPNNFAIQLNTDGV 123


>SB_36463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 77  FWCNWAFLATGFFVTAIVA 21
           FW N+AFL     VTAIVA
Sbjct: 64  FWVNFAFLMLNLCVTAIVA 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,340
Number of Sequences: 59808
Number of extensions: 249969
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)